Resource

Id DNase-seq/ENCSR617NTYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR617NTY [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
Description
Labels
  • accession: ENCSR617NTY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour
  • date_created: 2020-04-19T18:36:51.077513+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR617NTY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR617NTY float

DNase-seq_ENCSR617NTY
DNase-seq ENCSR617NTY [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR617NTY [0.234, 57.7]
n
7,971,367
mean
6.51
sd
6.91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 79713670.25% 43484
chr1 817947 0.33% 4448
chr2 538541 0.22% 2950
chr3 429187 0.22% 2311
chr4 273910 0.14% 1485
chr5 340572 0.19% 1863
chr6 458889 0.27% 2490
chr7 362173 0.23% 1988
chr8 286599 0.20% 1591
chr9 326916 0.24% 1808
chr10 349679 0.26% 1925
chr11 415032 0.31% 2258
chr12 415671 0.31% 2269
chr13 158267 0.14% 841
chr14 274301 0.26% 1493
chr15 262476 0.26% 1450
chr16 325756 0.36% 1784
chr17 496909 0.60% 2700
chr18 122281 0.15% 670
chr19 555618 0.95% 2949
chr20 224917 0.35% 1271
chr21 95672 0.20% 518
chr22 197183 0.39% 1090
chrX 235562 0.15% 1294
chrY 7309 0.01% 38
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43484 2 720 183.32 180
global segment-length histogram

Files

Filename Size md5
ENCFF494PPF.bed.gz 482.96 KB 9dfaa1fe162ba9583cc3a0933841a900
ENCFF494PPF.tabix.bed.gz 439.61 KB 9a5441a1609a0c10e04fab971377f82f
ENCFF494PPF.tabix.bed.gz.tbi 214.1 KB 036726f3a444265a42c5ba6abf06192f
genomic_resource.yaml 2.13 KB 56e650588454965d12a06e125e112449
statistics/