Resource

Id DNase-seq/ENCSR614NSHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR614NSH [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR614NSH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell
  • date_created: 2022-02-07T22:20:22.000540+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR614NSH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR614NSH float

DNase-seq_ENCSR614NSH
DNase-seq ENCSR614NSH [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR614NSH [0.144, 69]
n
10,271,732
mean
4.92
sd
7.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 102717320.32% 50490
chr1 1033751 0.42% 5084
chr2 749068 0.31% 3676
chr3 587046 0.30% 2861
chr4 373339 0.20% 1847
chr5 473705 0.26% 2323
chr6 628344 0.37% 3031
chr7 498225 0.31% 2447
chr8 375337 0.26% 1876
chr9 397730 0.29% 1970
chr10 461664 0.35% 2257
chr11 518565 0.38% 2584
chr12 544716 0.41% 2656
chr13 235613 0.21% 1137
chr14 365347 0.34% 1808
chr15 325640 0.32% 1621
chr16 390429 0.43% 1913
chr17 589972 0.71% 2914
chr18 167839 0.21% 846
chr19 589255 1.01% 2843
chr20 274214 0.43% 1371
chr21 135768 0.29% 661
chr22 228480 0.45% 1154
chrX 327685 0.21% 1610
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50490 2 1120 203.44 200
global segment-length histogram

Files

Filename Size md5
ENCFF076EKB.bed.gz 563.63 KB 242b43adbdf2f1b7b00de5fd39109ea7
ENCFF076EKB.tabix.bed.gz 516.29 KB 1f3fe8404f388f133d4ed8d4067eacd3
ENCFF076EKB.tabix.bed.gz.tbi 238.39 KB 77df540f66824cb7ae59ebe7d387242a
genomic_resource.yaml 1.21 KB 3af4468fa9242046ada7056180085d19
statistics/