Resource

Id DNase-seq/ENCSR612CTWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR612CTW [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)"]
Description
Labels
  • accession: ENCSR612CTW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004992/
  • biosample_summary: Homo sapiens mucosa of descending colon tissue male adult (40 years)
  • date_created: 2019-05-16T16:57:32.455288+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR612CTW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (40 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR612CTW float

DNase-seq_ENCSR612CTW
DNase-seq ENCSR612CTW [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR612CTW [0.0374, 49.8]
n
27,500,710
mean
2.55
sd
4.24

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275007100.85% 131981
chr1 2620707 1.05% 12482
chr2 1972602 0.81% 9621
chr3 1286696 0.65% 6265
chr4 950448 0.50% 4604
chr5 1072835 0.59% 5271
chr6 1145618 0.67% 5667
chr7 1433869 0.90% 6817
chr8 1041860 0.72% 5103
chr9 1343179 0.97% 6318
chr10 1239676 0.93% 5998
chr11 1800845 1.33% 8459
chr12 1153985 0.87% 5606
chr13 452443 0.40% 2170
chr14 978412 0.91% 4743
chr15 872859 0.86% 4225
chr16 1367406 1.51% 6486
chr17 1869269 2.25% 8733
chr18 390268 0.49% 1919
chr19 1543544 2.63% 7148
chr20 897568 1.39% 4340
chr21 498959 1.07% 2425
chr22 996659 1.96% 4792
chrX 545796 0.35% 2650
chrY 25207 0.04% 139
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 131981 1 1140 208.37 200
global segment-length histogram

Files

Filename Size md5
ENCFF515TNB.bed.gz 1.39 MB 6ec96250c506f4aba3598587df11529b
ENCFF515TNB.tabix.bed.gz 1.29 MB 49ebf0e2862d6cc8a14c1741ba679117
ENCFF515TNB.tabix.bed.gz.tbi 337.82 KB 28b5589f2e0518c48c455fd4e37556e9
genomic_resource.yaml 1.26 KB 23ab43526be00594f847f4799bc69e73
statistics/