Resource

Id DNase-seq/ENCSR606UARcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR606UAR [biosample_summary="Homo sapiens renal pelvis tissue female embryo (96 days)"]
Description
Labels
  • accession: ENCSR606UAR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001224/
  • biosample_summary: Homo sapiens renal pelvis tissue female embryo (96 days)
  • date_created: 2015-09-16T21:42:31.708492+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR606UAR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR606UAR float

DNase-seq_ENCSR606UAR
DNase-seq ENCSR606UAR [biosample_summary="Homo sapiens renal pelvis tissue female embryo (96 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR606UAR [0.129, 21]
n
12,608,482
mean
2.55
sd
2.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 126084820.39% 67199
chr1 1168367 0.47% 6194
chr2 988545 0.41% 5350
chr3 818604 0.41% 4336
chr4 639889 0.34% 3388
chr5 703016 0.39% 3713
chr6 754727 0.44% 3993
chr7 645028 0.40% 3445
chr8 555197 0.38% 2985
chr9 527195 0.38% 2800
chr10 594201 0.44% 3194
chr11 634338 0.47% 3405
chr12 640545 0.48% 3402
chr13 331146 0.29% 1771
chr14 413138 0.39% 2157
chr15 406781 0.40% 2190
chr16 406056 0.45% 2213
chr17 541215 0.65% 2861
chr18 286838 0.36% 1554
chr19 532673 0.91% 2701
chr20 312514 0.48% 1696
chr21 140356 0.30% 768
chr22 217085 0.43% 1175
chrX 350746 0.22% 1906
chrY 282 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 67199 1 940 187.63 180
global segment-length histogram

Files

Filename Size md5
ENCFF425UTV.bed.gz 711.28 KB a48cc7974d5bc31bd71d9ee1a92188f4
ENCFF425UTV.tabix.bed.gz 638.1 KB debd61a368acb146e88f62bf7d0d572d
ENCFF425UTV.tabix.bed.gz.tbi 345.79 KB 21a088db18e48ac17628655490fc9fd8
genomic_resource.yaml 1.84 KB 391a9f203da2dd87bc4757d3332b69a7
statistics/