Resource
| Id | DNase-seq/ENCSR606QDB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR606QDB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (82 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (82 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF727AGR|/files/ENCFF727AGR/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR606QDB | float |
DNase-seq_ENCSR606QDB |
DNase-seq ENCSR606QDB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (82 years)"]
|
 |
[0.0541, 11.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11370901 | 0.35% | 63674 |
| chr1 | 1073445 | 0.43% | 5988 |
| chr2 | 916687 | 0.38% | 5211 |
| chr3 | 610047 | 0.31% | 3435 |
| chr4 | 398601 | 0.21% | 2246 |
| chr5 | 545874 | 0.30% | 3092 |
| chr6 | 565865 | 0.33% | 3143 |
| chr7 | 531230 | 0.33% | 2990 |
| chr8 | 470086 | 0.32% | 2676 |
| chr9 | 498401 | 0.36% | 2787 |
| chr10 | 583784 | 0.44% | 3341 |
| chr11 | 643001 | 0.48% | 3606 |
| chr12 | 505149 | 0.38% | 2793 |
| chr13 | 220240 | 0.19% | 1248 |
| chr14 | 384137 | 0.36% | 2129 |
| chr15 | 417455 | 0.41% | 2407 |
| chr16 | 429946 | 0.48% | 2377 |
| chr17 | 605765 | 0.73% | 3335 |
| chr18 | 232676 | 0.29% | 1356 |
| chr19 | 624383 | 1.07% | 3258 |
| chr20 | 353714 | 0.55% | 1996 |
| chr21 | 135619 | 0.29% | 780 |
| chr22 | 344011 | 0.68% | 1898 |
| chrX | 269246 | 0.17% | 1514 |
| chrY | 11539 | 0.02% | 68 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 63674 | 2 | 920 | 178.58 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF521CSC.bed.gz | 693.74 KB | fc873ab742aa3d9e18b5ef39aff06b50 |
| ENCFF521CSC.tabix.bed.gz | 631.15 KB | 2a3eaae55896c6188556b5093e3bbbd6 |
| ENCFF521CSC.tabix.bed.gz.tbi | 277.87 KB | f33c50a19afc9f424a322ed78705140a |
| genomic_resource.yaml | 2.08 KB | e397363a47853d5cbba01faedba81a89 |
| statistics/ |