Resource

Id DNase-seq/ENCSR604FERcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR604FER [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
Description
Labels
  • accession: ENCSR604FER
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours
  • date_created: 2020-04-19T18:36:59.894070+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR604FER
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR604FER float

DNase-seq_ENCSR604FER
DNase-seq ENCSR604FER [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR604FER [0.0604, 59]
n
19,291,307
mean
4
sd
6.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 192913070.60% 105121
chr1 1891044 0.76% 10243
chr2 1432652 0.59% 7874
chr3 1084306 0.55% 5951
chr4 722244 0.38% 3924
chr5 899143 0.50% 4932
chr6 1111172 0.65% 6053
chr7 867656 0.54% 4826
chr8 785741 0.54% 4364
chr9 804495 0.58% 4374
chr10 906402 0.68% 4944
chr11 989055 0.73% 5389
chr12 939706 0.71% 5089
chr13 405540 0.35% 2248
chr14 652189 0.61% 3589
chr15 638152 0.63% 3510
chr16 775793 0.86% 4164
chr17 1076294 1.29% 5710
chr18 340301 0.42% 1901
chr19 1079999 1.84% 5655
chr20 563682 0.87% 3115
chr21 240369 0.51% 1320
chr22 459592 0.90% 2517
chrX 601126 0.39% 3289
chrY 24654 0.04% 140
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 105121 3 780 183.52 180
global segment-length histogram

Files

Filename Size md5
ENCFF649XYT.bed.gz 1.15 MB 52c5d7fff80768ffc1019dad658a9dff
ENCFF649XYT.tabix.bed.gz 1.05 MB 05a69e58140f63cd22606dc539c0b848
ENCFF649XYT.tabix.bed.gz.tbi 381.43 KB 913aa3617c75eafb1680adb97b78d5e6
genomic_resource.yaml 1.6 KB ab562cb4dc254626a269427ac91eda6b
statistics/