Resource

Id DNase-seq/ENCSR598RVJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR598RVJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (40 years)"]
Description
Labels
  • accession: ENCSR598RVJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue male adult (40 years)
  • date_created: 2019-02-01T18:56:57.589863+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR598RVJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (40 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR598RVJ float

DNase-seq_ENCSR598RVJ
DNase-seq ENCSR598RVJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (40 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR598RVJ [0.039, 29.9]
n
27,745,970
mean
1.49
sd
2.57

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 277459700.86% 145933
chr1 2505195 1.01% 13169
chr2 1983925 0.82% 10513
chr3 1298657 0.65% 6948
chr4 1174292 0.62% 6205
chr5 1183907 0.65% 6279
chr6 968127 0.57% 5344
chr7 1528966 0.96% 7983
chr8 1224558 0.84% 6258
chr9 1469743 1.06% 7616
chr10 1323375 0.99% 6899
chr11 1692597 1.25% 8734
chr12 1152008 0.86% 6181
chr13 464695 0.41% 2508
chr14 929296 0.87% 4857
chr15 701018 0.69% 3773
chr16 1419898 1.57% 7473
chr17 1744156 2.09% 9169
chr18 345504 0.43% 1899
chr19 1549704 2.64% 8149
chr20 964855 1.50% 4938
chr21 535394 1.15% 2755
chr22 1171811 2.31% 5975
chrX 396563 0.25% 2192
chrY 17726 0.03% 116
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 145933 1 1060 190.13 180
global segment-length histogram

Files

Filename Size md5
ENCFF296HHY.bed.gz 1.47 MB 49aa5c702b608b14e67687ac2cf3aaf8
ENCFF296HHY.tabix.bed.gz 1.36 MB ee4f645b55bbbaaa6b745ae5a7f141b5
ENCFF296HHY.tabix.bed.gz.tbi 311.9 KB ae4f462c9c54a880cb9aa9c12e885b50
genomic_resource.yaml 1.24 KB 31638695b58a917c3d726a9c335bd39c
statistics/