Resource

Id DNase-seq/ENCSR597URKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR597URK [biosample_summary="Homo sapiens T-cell female adult (28 years)"]
Description
Labels
  • accession: ENCSR597URK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (28 years)
  • date_created: 2020-03-30T19:01:27.674570+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR597URK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (28 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR597URK float

DNase-seq_ENCSR597URK

DNase-seq ENCSR597URK [biosample_summary="Homo sapiens T-cell female adult (28 years)"]
HISTOGRAM FOR DNase-seq_ENCSR597URK [0.141, 82.5]
n
10,023,968
mean
6.22
sd
8.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 100239680.31% 54804
chr1 1010305 0.41% 5516
chr2 703474 0.29% 3867
chr3 552022 0.28% 3031
chr4 354288 0.19% 1920
chr5 461138 0.25% 2546
chr6 602201 0.35% 3255
chr7 464468 0.29% 2574
chr8 362140 0.25% 2026
chr9 395665 0.29% 2191
chr10 453335 0.34% 2476
chr11 506488 0.37% 2785
chr12 516358 0.39% 2818
chr13 211969 0.19% 1146
chr14 347266 0.32% 1904
chr15 321381 0.32% 1781
chr16 403631 0.45% 2181
chr17 603100 0.72% 3280
chr18 163385 0.20% 907
chr19 635254 1.08% 3369
chr20 284021 0.44% 1570
chr21 118723 0.25% 641
chr22 239568 0.47% 1307
chrX 313788 0.20% 1713
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54804 1 660 182.91 180
global segment-length histogram

Files

Filename Size md5
ENCFF561HFN.bed.gz 614.76 KB 354af013c82e53aa4958915f5876dfce
ENCFF561HFN.tabix.bed.gz 560.78 KB 467fecd89d322821cef12f21ecae8efc
ENCFF561HFN.tabix.bed.gz.tbi 248.89 KB a9181fa76396d82dbab9083dba04daaf
genomic_resource.yaml 1.19 KB 00435b9e21424f56521d57849aa9fd92
statistics/