Resource

Id DNase-seq/ENCSR595HZQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR595HZQ [biosample_summary="Homo sapiens pancreas tissue female adult (30 years)"]
Description
Labels
  • accession: ENCSR595HZQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female adult (30 years)
  • date_created: 2015-09-16T21:42:34.644493+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR595HZQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR595HZQ float

DNase-seq_ENCSR595HZQ
DNase-seq ENCSR595HZQ [biosample_summary="Homo sapiens pancreas tissue female adult (30 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR595HZQ [6, 3.81e+03]
n
14,019,981
mean
67.3
sd
88.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 140199810.44% 93264
chr1 1339929 0.54% 8915
chr2 1124825 0.46% 7480
chr3 914449 0.46% 6082
chr4 669298 0.35% 4445
chr5 751128 0.41% 5000
chr6 836527 0.49% 5569
chr7 722857 0.45% 4808
chr8 645726 0.44% 4299
chr9 591619 0.43% 3935
chr10 694500 0.52% 4618
chr11 715350 0.53% 4753
chr12 696431 0.52% 4634
chr13 364114 0.32% 2416
chr14 456300 0.43% 3035
chr15 458177 0.45% 3051
chr16 470075 0.52% 3131
chr17 599909 0.72% 3994
chr18 301577 0.38% 2005
chr19 487602 0.83% 3246
chr20 358650 0.56% 2388
chr21 172177 0.37% 1147
chr22 267583 0.53% 1781
chrX 378028 0.24% 2511
chrY 3150 0.01% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93264 28 431 150.33 150
global segment-length histogram

Files

Filename Size md5
ENCFF735JRV.bed.gz 907.55 KB d1988c9fe8b91852553e11ab905f7bd2
ENCFF735JRV.tabix.bed.gz 779.39 KB 2282f74b2a237e4af096cb9ddbe532f7
ENCFF735JRV.tabix.bed.gz.tbi 445.07 KB e3e885790b97c294d8a0575ca012e4e1
genomic_resource.yaml 1.39 KB 44a44335574ac76386992e6377410427
statistics/