Resource

Id DNase-seq/ENCSR595DQMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR595DQM [biosample_summary="Homo sapiens aorta tissue female adult (59 years)"]
Description
Labels
  • accession: ENCSR595DQM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000947/
  • biosample_summary: Homo sapiens aorta tissue female adult (59 years)
  • date_created: 2019-11-01T17:50:57.913197+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR595DQM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR595DQM float

DNase-seq_ENCSR595DQM
DNase-seq ENCSR595DQM [biosample_summary="Homo sapiens aorta tissue female adult (59 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR595DQM [0.0315, 18.5]
n
46,610,574
mean
0.783
sd
1.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 466105741.45% 230824
chr1 4312355 1.73% 21313
chr2 3429602 1.42% 17000
chr3 2178701 1.10% 10993
chr4 1514729 0.80% 7483
chr5 1966370 1.08% 9840
chr6 1610439 0.94% 8290
chr7 2653051 1.66% 13045
chr8 1703007 1.17% 8353
chr9 2068611 1.49% 10160
chr10 2476538 1.85% 12232
chr11 2878271 2.13% 13886
chr12 1911075 1.43% 9667
chr13 690749 0.60% 3574
chr14 1559077 1.46% 7609
chr15 1511850 1.48% 7631
chr16 2416714 2.68% 12025
chr17 3168263 3.81% 15560
chr18 659432 0.82% 3320
chr19 2072461 3.54% 10141
chr20 1754945 2.72% 8646
chr21 929436 1.99% 4453
chr22 2130002 4.19% 10299
chrX 1011741 0.65% 5279
chrY 3155 0.01% 25
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 230824 1 1140 201.93 184
global segment-length histogram

Files

Filename Size md5
ENCFF289CAI.bed.gz 2.23 MB 8b40e6fc58711706550a367370fb7efb
ENCFF289CAI.tabix.bed.gz 2.1 MB a53f9da187012f152a349cb945e1687d
ENCFF289CAI.tabix.bed.gz.tbi 325.8 KB 2d799b72ee8201ce40d98b87a1834103
genomic_resource.yaml 1.21 KB 4fe684dc87993d3712d0b4f2152052d1
statistics/