Resource
| Id | DNase-seq/ENCSR594OWA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR594OWA [biosample_summary="Homo sapiens small intestine tissue male embryo (91 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (91 days) output_type: peaks audit_warning: Alignment file {ENCFF768OXG|/files/ENCFF768OXG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 21998088 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR594OWA | float |
DNase-seq_ENCSR594OWA |
DNase-seq ENCSR594OWA [biosample_summary="Homo sapiens small intestine tissue male embryo (91 days)"]
|
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[0.319, 17.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8252712 | 0.26% | 47911 |
| chr1 | 778738 | 0.31% | 4510 |
| chr2 | 651972 | 0.27% | 3838 |
| chr3 | 554203 | 0.28% | 3219 |
| chr4 | 442264 | 0.23% | 2583 |
| chr5 | 451420 | 0.25% | 2629 |
| chr6 | 507177 | 0.30% | 2957 |
| chr7 | 415052 | 0.26% | 2416 |
| chr8 | 350297 | 0.24% | 2066 |
| chr9 | 331467 | 0.24% | 1934 |
| chr10 | 372966 | 0.28% | 2192 |
| chr11 | 422112 | 0.31% | 2466 |
| chr12 | 433343 | 0.33% | 2505 |
| chr13 | 219416 | 0.19% | 1270 |
| chr14 | 271140 | 0.25% | 1584 |
| chr15 | 247735 | 0.24% | 1466 |
| chr16 | 279315 | 0.31% | 1602 |
| chr17 | 344495 | 0.41% | 1968 |
| chr18 | 201322 | 0.25% | 1168 |
| chr19 | 349757 | 0.60% | 1844 |
| chr20 | 206160 | 0.32% | 1231 |
| chr21 | 88085 | 0.19% | 513 |
| chr22 | 141662 | 0.28% | 823 |
| chrX | 184912 | 0.12% | 1087 |
| chrY | 7702 | 0.01% | 40 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 47911 | 6 | 720 | 172.25 | 170 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF478NDZ.bed.gz | 508.9 KB | 2e27acb15abcc5da3293f9d5454c710d |
| ENCFF478NDZ.tabix.bed.gz | 446.12 KB | e7ddf367003d1be2802f0e81e16bcd5c |
| ENCFF478NDZ.tabix.bed.gz.tbi | 288.23 KB | 41ad45b7b967e39bb6484c1a487b626a |
| genomic_resource.yaml | 1.84 KB | 1eb7b3328f2d41543bd8049325c0a52c |
| statistics/ |
