Resource

Id DNase-seq/ENCSR594NOEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR594NOE [biosample_summary="Homo sapiens RPMI8226"]
Description
Labels
  • accession: ENCSR594NOE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002322/
  • biosample_summary: Homo sapiens RPMI8226
  • date_created: 2015-03-22T21:36:19.696325+00:00
  • date_released: 2015-11-05
  • doi: 10.17989/ENCSR594NOE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR594NOE float

DNase-seq_ENCSR594NOE
DNase-seq ENCSR594NOE [biosample_summary="Homo sapiens RPMI8226"]
 HISTOGRAM FOR DNase-seq_ENCSR594NOE [1, 150]
n
32,932,270
mean
57.7
sd
35.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 329322701.02% 232351
chr1 3351270 1.35% 23692
chr2 2457640 1.01% 17360
chr3 2004930 1.01% 14066
chr4 1209320 0.64% 8472
chr5 1730390 0.95% 12071
chr6 1862300 1.09% 13111
chr7 1995220 1.25% 14345
chr8 1323860 0.91% 9244
chr9 1391590 1.01% 9858
chr10 1347860 1.01% 9416
chr11 1624310 1.20% 11411
chr12 1565080 1.17% 11020
chr13 671440 0.59% 4668
chr14 838280 0.78% 5826
chr15 1212790 1.19% 8607
chr16 1345030 1.49% 9615
chr17 1608790 1.93% 11418
chr18 776350 0.97% 5469
chr19 1439910 2.46% 10295
chr20 1013450 1.57% 7062
chr21 472090 1.01% 3339
chr22 751330 1.48% 5348
chrX 859150 0.55% 6035
chrY 79890 0.14% 603
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 232351 10 370 141.74 150
global segment-length histogram

Files

Filename Size md5
ENCFF352OEJ.bed.gz 1.97 MB c24184265b23634cdcae3bb3525ee612
ENCFF352OEJ.tabix.bed.gz 1.81 MB a5b64e280fcfb65488e7717a94ff035e
ENCFF352OEJ.tabix.bed.gz.tbi 603.1 KB 63f111590418734fa7d84a50a22ed527
genomic_resource.yaml 1.26 KB 16e3de34b9786a9991464553b449df4c
statistics/