Resource

Id DNase-seq/ENCSR593WXKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR593WXK [biosample_summary="Homo sapiens inflammatory macrophage male adult (21 years)"]
Description
Labels
  • accession: ENCSR593WXK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000863/
  • biosample_summary: Homo sapiens inflammatory macrophage male adult (21 years)
  • date_created: 2021-11-18T17:43:08.250872+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR593WXK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR721XAP.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR593WXK float

DNase-seq_ENCSR593WXK

DNase-seq ENCSR593WXK [biosample_summary="Homo sapiens inflammatory macrophage male adult (21 years)"]
HISTOGRAM FOR DNase-seq_ENCSR593WXK [0.025, 31.7]
n
30,695,100
mean
2.25
sd
2.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 306951000.95% 163005
chr1 2961833 1.19% 15803
chr2 2495974 1.03% 13222
chr3 2068438 1.04% 10988
chr4 1317807 0.69% 7041
chr5 1611897 0.89% 8627
chr6 1881419 1.10% 9900
chr7 1474123 0.93% 7859
chr8 1372741 0.95% 7338
chr9 1281950 0.93% 6875
chr10 1522937 1.14% 8092
chr11 1498725 1.11% 7875
chr12 1613157 1.21% 8482
chr13 715651 0.63% 3810
chr14 955988 0.89% 5077
chr15 1050059 1.03% 5578
chr16 1003449 1.11% 5345
chr17 1428931 1.72% 7536
chr18 623287 0.78% 3323
chr19 1161412 1.98% 6007
chr20 852308 1.32% 4541
chr21 382106 0.82% 2058
chr22 564467 1.11% 3005
chrX 824412 0.53% 4444
chrY 32029 0.06% 179
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 163005 1 840 188.31 200
global segment-length histogram

Files

Filename Size md5
ENCFF580ICE.bed.gz 1.79 MB 106057614c3d07de2652faa9150781ed
ENCFF580ICE.tabix.bed.gz 1.62 MB bce6afa28f96bd0f09a0daedb3b40649
ENCFF580ICE.tabix.bed.gz.tbi 501.43 KB 1af58987b8522d58e1cd023285c21778
genomic_resource.yaml 1.33 KB cf2fc2c1e07632486aa278d348fd4929
statistics/