Resource
| Id | DNase-seq/ENCSR590EFT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR590EFT [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF265UWQ|/files/ENCFF265UWQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR590EFT | float |
DNase-seq_ENCSR590EFT |
DNase-seq ENCSR590EFT [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
|
 |
[0.0708, 11.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9879297 | 0.31% | 50479 |
| chr1 | 873845 | 0.35% | 4516 |
| chr2 | 945815 | 0.39% | 4715 |
| chr3 | 487311 | 0.25% | 2495 |
| chr4 | 342504 | 0.18% | 1742 |
| chr5 | 501593 | 0.28% | 2600 |
| chr6 | 346438 | 0.20% | 1872 |
| chr7 | 510172 | 0.32% | 2666 |
| chr8 | 468444 | 0.32% | 2340 |
| chr9 | 411332 | 0.30% | 2100 |
| chr10 | 533350 | 0.40% | 2745 |
| chr11 | 628872 | 0.47% | 3169 |
| chr12 | 360183 | 0.27% | 1848 |
| chr13 | 188539 | 0.16% | 971 |
| chr14 | 334216 | 0.31% | 1665 |
| chr15 | 355738 | 0.35% | 1849 |
| chr16 | 350517 | 0.39% | 1791 |
| chr17 | 505772 | 0.61% | 2628 |
| chr18 | 193569 | 0.24% | 986 |
| chr19 | 443810 | 0.76% | 2200 |
| chr20 | 348165 | 0.54% | 1787 |
| chr21 | 165304 | 0.35% | 837 |
| chr22 | 373280 | 0.73% | 1889 |
| chrX | 209809 | 0.13% | 1062 |
| chrY | 719 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 50479 | 1 | 1260 | 195.71 | 185 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF006ZAY.bed.gz | 515.71 KB | 3c4ed23ae623ebfa0cb62a1f35c0d4a9 |
| ENCFF006ZAY.tabix.bed.gz | 477.84 KB | 7d086c1f2a6945b154c30d23d7b4297d |
| ENCFF006ZAY.tabix.bed.gz.tbi | 162.5 KB | df143430a4d5babfc1a502b99d710617 |
| genomic_resource.yaml | 2.13 KB | b936d1d8bfa4e110284c8b9f7f37eb78 |
| statistics/ |