Resource

Id DNase-seq/ENCSR589HACcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR589HAC [biosample_summary="Homo sapiens pancreas tissue female adult (61 years)"]
Description
Labels
  • accession: ENCSR589HAC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female adult (61 years)
  • date_created: 2019-02-01T20:22:29.543006+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR589HAC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (61 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR589HAC float

DNase-seq_ENCSR589HAC

DNase-seq ENCSR589HAC [biosample_summary="Homo sapiens pancreas tissue female adult (61 years)"]
HISTOGRAM FOR DNase-seq_ENCSR589HAC [0.0379, 24.6]
n
40,118,582
mean
1.09
sd
1.46

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 401185821.25% 187732
chr1 3323193 1.33% 15459
chr2 2554592 1.05% 12207
chr3 1628159 0.82% 8001
chr4 1724829 0.91% 8068
chr5 1565639 0.86% 7572
chr6 1321783 0.77% 6562
chr7 2397541 1.50% 11205
chr8 1849600 1.27% 8257
chr9 2167767 1.57% 9995
chr10 1665622 1.24% 7910
chr11 2584387 1.91% 11657
chr12 1542564 1.16% 7393
chr13 738756 0.65% 3529
chr14 1384551 1.29% 6317
chr15 958337 0.94% 4746
chr16 2253621 2.49% 10313
chr17 2722784 3.27% 12529
chr18 514984 0.64% 2513
chr19 2566821 4.38% 11858
chr20 1281878 1.99% 5854
chr21 679221 1.45% 3181
chr22 1597647 3.14% 7244
chrX 1087668 0.70% 5313
chrY 6638 0.01% 49
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 187732 1 1175 213.7 199
global segment-length histogram

Files

Filename Size md5
ENCFF143FCH.bed.gz 1.84 MB 21a24393bcac1be07c11dffc472c5e7b
ENCFF143FCH.tabix.bed.gz 1.75 MB 274a45aa4678d75de7c2de5cc545af3b
ENCFF143FCH.tabix.bed.gz.tbi 362.53 KB 6ed8f2b5309f2f69f65625ac1e20d783
genomic_resource.yaml 1.21 KB 8a50c3016f621863a27173daeb220957
statistics/