Resource

Id DNase-seq/ENCSR582QEWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR582QEW [biosample_summary="Homo sapiens effector memory CD4-positive, alpha-beta T cell female adult (25 years)"]
Description
Labels
  • accession: ENCSR582QEW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000905/
  • biosample_summary: Homo sapiens effector memory CD4-positive, alpha-beta T cell female adult (25 years)
  • date_created: 2020-04-11T19:00:24.343018+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR582QEW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR582QEW float

DNase-seq_ENCSR582QEW
DNase-seq ENCSR582QEW [biosample_summary="Homo sapiens effector memory CD4-positive, alpha-beta T cell female adult (25 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR582QEW [0.23, 84.7]
n
8,464,480
mean
7.79
sd
10

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 84644800.26% 40883
chr1 860844 0.35% 4175
chr2 573697 0.24% 2756
chr3 439838 0.22% 2138
chr4 276753 0.15% 1314
chr5 370495 0.20% 1774
chr6 490336 0.29% 2376
chr7 385203 0.24% 1859
chr8 302064 0.21% 1465
chr9 336628 0.24% 1621
chr10 375855 0.28% 1809
chr11 439205 0.33% 2140
chr12 426079 0.32% 2056
chr13 166654 0.15% 782
chr14 298481 0.28% 1457
chr15 263434 0.26% 1303
chr16 364628 0.40% 1752
chr17 553769 0.67% 2685
chr18 127943 0.16% 639
chr19 604783 1.03% 2838
chr20 234732 0.36% 1166
chr21 95741 0.20% 474
chr22 213100 0.42% 1042
chrX 264218 0.17% 1262
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40883 4 820 207.04 200
global segment-length histogram

Files

Filename Size md5
ENCFF383STX.bed.gz 457.88 KB 451042ed21b7c9002a2e36d323b71796
ENCFF383STX.tabix.bed.gz 418.78 KB 683f1259a86dbad2bbd5b2276aeec293
ENCFF383STX.tabix.bed.gz.tbi 196.49 KB cec36264eb63ef70272048d9d296e467
genomic_resource.yaml 1.32 KB df682caf15a4f6239a39c0274fb0fbd9
statistics/