Resource
| Id | DNase-seq/ENCSR582IPV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR582IPV [biosample_summary="Homo sapiens lung tissue embryo (80 days) and male embryo (76 days)"] |
| Description |
status: released biological_replicates: Rep 2 summary: embryo (80 days) male embryo (76 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN199MUH|/analyses/ENCAN199MUH/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_not_compliant: Replicate concordance in DNase-seq experiments is measured by calculating the Pearson correlation between signal quantification of the replicates. ENCODE processed signal files {ENCFF830TGU|/files/ENCFF830TGU/}, {ENCFF629AAK|/files/ENCFF629AAK/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a Pearson correlation of 0.83. According to ENCODE standards, in an anisogenic assay a Pearson correlation value > 0.85 is recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR582IPV | float |
DNase-seq_ENCSR582IPV |
DNase-seq ENCSR582IPV [biosample_summary="Homo sapiens lung tissue embryo (80 days) and male embryo (76 days)"]
|
 |
[6, 1.88e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50839846 | 1.58% | 338334 |
| chr1 | 4404465 | 1.77% | 29311 |
| chr2 | 4285115 | 1.77% | 28524 |
| chr3 | 3437945 | 1.73% | 22880 |
| chr4 | 2865766 | 1.51% | 19071 |
| chr5 | 3029657 | 1.67% | 20157 |
| chr6 | 3121271 | 1.83% | 20779 |
| chr7 | 2673134 | 1.68% | 17782 |
| chr8 | 2479830 | 1.71% | 16494 |
| chr9 | 2139072 | 1.55% | 14233 |
| chr10 | 2558709 | 1.91% | 17037 |
| chr11 | 2463927 | 1.82% | 16409 |
| chr12 | 2372227 | 1.78% | 15777 |
| chr13 | 1582254 | 1.38% | 10520 |
| chr14 | 1557170 | 1.45% | 10366 |
| chr15 | 1623704 | 1.59% | 10818 |
| chr16 | 1508902 | 1.67% | 10047 |
| chr17 | 1893315 | 2.27% | 12607 |
| chr18 | 1295129 | 1.61% | 8608 |
| chr19 | 1242126 | 2.12% | 8272 |
| chr20 | 1262809 | 1.96% | 8408 |
| chr21 | 599369 | 1.28% | 3987 |
| chr22 | 767680 | 1.51% | 5111 |
| chrX | 1590949 | 1.02% | 10568 |
| chrY | 85321 | 0.15% | 568 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 338334 | 2 | 450 | 150.27 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF148PHO.bed.gz | 3.22 MB | aab0a33c13e9cfe90fdf48c9628309e7 |
| ENCFF148PHO.tabix.bed.gz | 2.78 MB | f1c8a8fcd64198f464a5a6ea11dcbb12 |
| ENCFF148PHO.tabix.bed.gz.tbi | 823.97 KB | 243ec8f89963f011f4d0f47cee5191b9 |
| genomic_resource.yaml | 2.07 KB | 7aaa8f36c630d53eb3b8c37d8d0c5cb9 |
| statistics/ |