Resource

Id DNase-seq/ENCSR579DBAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR579DBA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours"]
Description
Labels
  • accession: ENCSR579DBA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours
  • date_created: 2020-04-19T18:36:58.749145+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR579DBA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR579DBA float

DNase-seq_ENCSR579DBA
DNase-seq ENCSR579DBA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR579DBA [0.324, 68.9]
n
8,123,460
mean
7.99
sd
9.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 81234600.25% 45871
chr1 818700 0.33% 4633
chr2 572386 0.24% 3257
chr3 448871 0.23% 2549
chr4 291128 0.15% 1652
chr5 358198 0.20% 2045
chr6 475519 0.28% 2682
chr7 374153 0.23% 2151
chr8 302425 0.21% 1714
chr9 322293 0.23% 1788
chr10 362568 0.27% 2072
chr11 411494 0.30% 2326
chr12 425274 0.32% 2389
chr13 166199 0.15% 949
chr14 286170 0.27% 1618
chr15 260814 0.26% 1507
chr16 332040 0.37% 1854
chr17 486541 0.58% 2704
chr18 127371 0.16% 718
chr19 539246 0.92% 2928
chr20 230028 0.36% 1310
chr21 95307 0.20% 547
chr22 194709 0.38% 1113
chrX 233534 0.15% 1318
chrY 8492 0.01% 47
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45871 2 700 177.09 180
global segment-length histogram

Files

Filename Size md5
ENCFF770XME.bed.gz 505.63 KB 04a39dc4213771f16d5d8eec580dbf7f
ENCFF770XME.tabix.bed.gz 456.82 KB c67c82d27e2acaa4e169b63311d7d5d0
ENCFF770XME.tabix.bed.gz.tbi 230.05 KB 4bdd93cc67fdf811ae371bf24729b52f
genomic_resource.yaml 2.43 KB 1e71e34490ca6f6185d8af4f25d29e1f
statistics/