Resource

Id DNase-seq/ENCSR576UAFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR576UAF [biosample_summary="Homo sapiens colonic mucosa tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR576UAF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000317/
  • biosample_summary: Homo sapiens colonic mucosa tissue female child (16 years)
  • date_created: 2019-11-01T17:50:57.857665+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR576UAF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR576UAF float

DNase-seq_ENCSR576UAF
DNase-seq ENCSR576UAF [biosample_summary="Homo sapiens colonic mucosa tissue female child (16 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR576UAF [0.0323, 21.4]
n
26,439,181
mean
1.56
sd
1.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 264391810.82% 134006
chr1 2672295 1.07% 13393
chr2 2058680 0.85% 10525
chr3 1475860 0.74% 7584
chr4 1011239 0.53% 5202
chr5 1210115 0.67% 6249
chr6 1430931 0.84% 7331
chr7 1295212 0.81% 6516
chr8 1069986 0.74% 5501
chr9 1140189 0.82% 5824
chr10 1424130 1.06% 7275
chr11 1475163 1.09% 7352
chr12 1190372 0.89% 6051
chr13 516372 0.45% 2695
chr14 950962 0.89% 4750
chr15 969261 0.95% 4912
chr16 1004752 1.11% 5105
chr17 1425882 1.71% 7093
chr18 528979 0.66% 2725
chr19 1219166 2.08% 5875
chr20 795531 1.23% 4030
chr21 378879 0.81% 1911
chr22 601064 1.18% 3031
chrX 593175 0.38% 3068
chrY 986 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 134006 1 1160 197.3 186
global segment-length histogram

Files

Filename Size md5
ENCFF519VQD.bed.gz 1.42 MB 85dbe1992a2dafd3aa5d5ce9dc3e9bb0
ENCFF519VQD.tabix.bed.gz 1.31 MB 86281152e1dddf5015b883385303665c
ENCFF519VQD.tabix.bed.gz.tbi 397.15 KB b494f84e82a4f52904b677cf7904bbe8
genomic_resource.yaml 1.65 KB 095a86e07f31fe0d512b932c0e2862da
statistics/