Resource

Id DNase-seq/ENCSR575VMIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR575VMI [biosample_summary="Homo sapiens placenta tissue female embryo (101 days) and male embryo (105 days)"]
Description
Labels
  • accession: ENCSR575VMI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue female embryo (101 days) and male embryo (105 days)
  • date_created: 2015-09-29T04:06:41.674333+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR575VMI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: male embryo (105 days) female embryo (101 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR575VMI float

DNase-seq_ENCSR575VMI
DNase-seq ENCSR575VMI [biosample_summary="Homo sapiens placenta tissue female embryo (101 days) and male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR575VMI [6, 1.34e+04]
n
25,856,554
mean
162
sd
160

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 258565540.80% 172203
chr1 2505628 1.01% 16697
chr2 2064116 0.85% 13745
chr3 1702609 0.86% 11344
chr4 1313411 0.69% 8753
chr5 1416303 0.78% 9435
chr6 1634396 0.96% 10884
chr7 1392110 0.87% 9274
chr8 1146226 0.79% 7634
chr9 1115802 0.81% 7431
chr10 1218568 0.91% 8109
chr11 1287854 0.95% 8571
chr12 1249491 0.94% 8330
chr13 633516 0.55% 4217
chr14 802054 0.75% 5338
chr15 824769 0.81% 5489
chr16 816760 0.90% 5440
chr17 1042981 1.25% 6940
chr18 553538 0.69% 3685
chr19 914380 1.56% 6087
chr20 670555 1.04% 4466
chr21 303087 0.65% 2016
chr22 439037 0.86% 2926
chrX 741337 0.48% 4938
chrY 68026 0.12% 454
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 172203 6 300 150.15 150
global segment-length histogram

Files

Filename Size md5
ENCFF421EQO.bed.gz 1.67 MB 600b54c37e3e97b08c4dcbb47e4e223c
ENCFF421EQO.tabix.bed.gz 1.43 MB 7b131eea4e400692e9c358aa81a4e7b3
ENCFF421EQO.tabix.bed.gz.tbi 572.7 KB f70f0937735a31c3f8775ba5c261a855
genomic_resource.yaml 1.52 KB ae2595be8f8a4a72ed8bd6ea55e0a40e
statistics/