Resource

Id DNase-seq/ENCSR572LDGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR572LDG [biosample_summary="Homo sapiens brain tissue male embryo (101 days)"]
Description
Labels
  • accession: ENCSR572LDG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue male embryo (101 days)
  • date_created: 2015-09-16T21:42:27.458136+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR572LDG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (101 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR572LDG float

DNase-seq_ENCSR572LDG
DNase-seq ENCSR572LDG [biosample_summary="Homo sapiens brain tissue male embryo (101 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR572LDG [2, 2.75e+03]
n
16,510,590
mean
55
sd
73.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 165105900.51% 109812
chr1 1406328 0.56% 9359
chr2 1370247 0.57% 9118
chr3 1132108 0.57% 7528
chr4 969801 0.51% 6447
chr5 1007012 0.55% 6694
chr6 998638 0.58% 6645
chr7 894743 0.56% 5949
chr8 834145 0.57% 5549
chr9 679679 0.49% 4517
chr10 752171 0.56% 5002
chr11 822385 0.61% 5471
chr12 815138 0.61% 5425
chr13 522908 0.46% 3473
chr14 526961 0.49% 3505
chr15 494942 0.49% 3292
chr16 511811 0.57% 3403
chr17 573948 0.69% 3819
chr18 423699 0.53% 2815
chr19 443778 0.76% 2953
chr20 404550 0.63% 2694
chr21 193776 0.41% 1290
chr22 250105 0.49% 1667
chrX 458617 0.29% 3043
chrY 23100 0.04% 154
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109812 10 362 150.35 150
global segment-length histogram

Files

Filename Size md5
ENCFF207IYJ.bed.gz 1.04 MB ced6c2ca2e944f0762fe5728d0e0a9e4
ENCFF207IYJ.tabix.bed.gz 912.37 KB d4aac032492d4f61739c9aa2686e56c9
ENCFF207IYJ.tabix.bed.gz.tbi 539.52 KB 1694650d095afc8a93f0e19686c07618
genomic_resource.yaml 1.38 KB 5606ab1f737562068b1ae06a8d549846
statistics/