Resource

Id DNase-seq/ENCSR572HUGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR572HUG [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR572HUG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000502/
  • biosample_summary: Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • date_created: 2021-08-31T15:47:27.581372+00:00
  • date_released: 2021-09-10
  • doi: 10.17989/ENCSR572HUG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR572HUG float

DNase-seq_ENCSR572HUG
DNase-seq ENCSR572HUG [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR572HUG [0.0704, 32.7]
n
15,792,718
mean
3.48
sd
4.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 157927180.49% 81186
chr1 1568191 0.63% 8002
chr2 1147391 0.47% 5917
chr3 868592 0.44% 4452
chr4 564310 0.30% 2885
chr5 710080 0.39% 3702
chr6 903220 0.53% 4653
chr7 720045 0.45% 3723
chr8 611319 0.42% 3234
chr9 662397 0.48% 3412
chr10 731262 0.55% 3774
chr11 823627 0.61% 4258
chr12 781832 0.59% 3965
chr13 312050 0.27% 1599
chr14 523120 0.49% 2711
chr15 521078 0.51% 2720
chr16 656183 0.73% 3346
chr17 941302 1.13% 4727
chr18 275738 0.34% 1433
chr19 975643 1.66% 4860
chr20 451711 0.70% 2404
chr21 183801 0.39% 963
chr22 386286 0.76% 1988
chrX 457374 0.29% 2373
chrY 16166 0.03% 85
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81186 2 880 194.53 180
global segment-length histogram

Files

Filename Size md5
ENCFF780OYV.bed.gz 900.75 KB 38dcc4c40fe275e7c7483170b8338d67
ENCFF780OYV.tabix.bed.gz 825.71 KB 3cb290e8dd33d0f2ac964a032ac2d1f1
ENCFF780OYV.tabix.bed.gz.tbi 315.44 KB c22b10fd8d4cea58dbf39b1840bd2cd9
genomic_resource.yaml 1.8 KB 255119acbe8cb444995d5e7cfb922cda
statistics/