Resource

Id DNase-seq/ENCSR572FSScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR572FSS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR572FSS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-19T18:36:58.449831+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR572FSS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR572FSS float

DNase-seq_ENCSR572FSS
DNase-seq ENCSR572FSS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR572FSS [0.323, 48.5]
n
6,312,626
mean
6.7
sd
6.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 63126260.20% 35262
chr1 646923 0.26% 3584
chr2 432699 0.18% 2405
chr3 342813 0.17% 1900
chr4 216011 0.11% 1203
chr5 277867 0.15% 1563
chr6 359892 0.21% 2006
chr7 294052 0.18% 1655
chr8 227846 0.16% 1295
chr9 249877 0.18% 1401
chr10 272268 0.20% 1528
chr11 329822 0.24% 1850
chr12 321719 0.24% 1790
chr13 126201 0.11% 694
chr14 224295 0.21% 1252
chr15 213684 0.21% 1193
chr16 261349 0.29% 1471
chr17 392799 0.47% 2208
chr18 94429 0.12% 531
chr19 450162 0.77% 2446
chr20 172917 0.27% 987
chr21 71651 0.15% 405
chr22 155259 0.31% 882
chrX 171662 0.11% 977
chrY 6429 0.01% 36
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 35262 1 731 179.02 180
global segment-length histogram

Files

Filename Size md5
ENCFF507YCB.bed.gz 388.33 KB ea2f4c281e85d678ab67e8f93235cea2
ENCFF507YCB.tabix.bed.gz 352.45 KB 874177fd907b3cac9c29bcb8f7bac95a
ENCFF507YCB.tabix.bed.gz.tbi 189.95 KB d2c3a0dc51f66b6571463d2631dbb8be
genomic_resource.yaml 1.87 KB 77ea2b926e4d7899c56bddf82d3d4f42
statistics/