Resource

Id DNase-seq/ENCSR567IWTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR567IWT [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years)"]
Description
Labels
  • accession: ENCSR567IWT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years)
  • date_created: 2018-11-30T18:43:55.198075+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR567IWT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR567IWT float

DNase-seq_ENCSR567IWT
DNase-seq ENCSR567IWT [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR567IWT [0.0349, 99.1]
n
15,520,785
mean
6.02
sd
9.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 155207850.48% 85096
chr1 1544004 0.62% 8467
chr2 1112301 0.46% 6122
chr3 826581 0.42% 4549
chr4 533426 0.28% 2924
chr5 684573 0.38% 3762
chr6 889172 0.52% 4882
chr7 716048 0.45% 3945
chr8 613418 0.42% 3413
chr9 625183 0.45% 3426
chr10 723433 0.54% 3981
chr11 806393 0.60% 4398
chr12 784518 0.59% 4300
chr13 334224 0.29% 1829
chr14 563962 0.53% 3096
chr15 511681 0.50% 2856
chr16 639488 0.71% 3482
chr17 919632 1.10% 4993
chr18 267114 0.33% 1468
chr19 911440 1.55% 4871
chr20 433142 0.67% 2416
chr21 192280 0.41% 1061
chr22 395199 0.78% 2144
chrX 493224 0.32% 2707
chrY 349 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85096 1 818 182.39 180
global segment-length histogram

Files

Filename Size md5
ENCFF048LCV.bed.gz 971.81 KB 4bf619be66f64f2e36a2c56cd635dd76
ENCFF048LCV.tabix.bed.gz 886.81 KB e460b06551e15f8d5ea813a47775a085
ENCFF048LCV.tabix.bed.gz.tbi 300.99 KB 1a1007932ec382f490f01bbbe08f712f
genomic_resource.yaml 1.27 KB ccbe1331cd1d19e8ecde41e0a01616f2
statistics/