Resource

Id DNase-seq/ENCSR566HLQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR566HLQ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"]
Description
Labels
  • accession: ENCSR566HLQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours
  • date_created: 2020-04-18T22:21:50.773800+00:00
  • date_released: 2020-09-19
  • doi: 10.17989/ENCSR566HLQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR566HLQ float

DNase-seq_ENCSR566HLQ
DNase-seq ENCSR566HLQ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR566HLQ [0.54, 41.6]
n
6,168,451
mean
5.86
sd
4.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 61684510.19% 33425
chr1 634021 0.25% 3394
chr2 418884 0.17% 2270
chr3 341396 0.17% 1853
chr4 222199 0.12% 1203
chr5 279438 0.15% 1526
chr6 352454 0.21% 1899
chr7 284995 0.18% 1566
chr8 221407 0.15% 1226
chr9 257007 0.19% 1396
chr10 264116 0.20% 1434
chr11 321156 0.24% 1738
chr12 318481 0.24% 1708
chr13 124556 0.11% 658
chr14 212526 0.20% 1152
chr15 202041 0.20% 1115
chr16 253194 0.28% 1377
chr17 361920 0.43% 1971
chr18 94774 0.12% 542
chr19 436466 0.74% 2265
chr20 167534 0.26% 938
chr21 72789 0.16% 400
chr22 147481 0.29% 806
chrX 179616 0.12% 988
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33425 5 700 184.55 180
global segment-length histogram

Files

Filename Size md5
ENCFF792WBY.bed.gz 361.09 KB 8b77eb0bc4b002b8321ff2cd176ff28e
ENCFF792WBY.tabix.bed.gz 327.0 KB 11d8215bce91a156e66c948134c725cc
ENCFF792WBY.tabix.bed.gz.tbi 188.5 KB 1e6c4fcf09c3edf39d6fcec02af8755f
genomic_resource.yaml 2.66 KB 99d2f579d7da73bc3462e1489aa4f46d
statistics/