Resource
| Id | DNase-seq/ENCSR565RQI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR565RQI [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour output_type: peaks audit_error: Alignment file {ENCFF099GCR|/files/ENCFF099GCR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 12771338 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR565RQI | float |
DNase-seq_ENCSR565RQI |
DNase-seq ENCSR565RQI [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
|
 |
[0.629, 65.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 4686471 | 0.15% | 26451 |
| chr1 | 477654 | 0.19% | 2691 |
| chr2 | 326257 | 0.13% | 1863 |
| chr3 | 256555 | 0.13% | 1460 |
| chr4 | 163067 | 0.09% | 929 |
| chr5 | 207201 | 0.11% | 1175 |
| chr6 | 266775 | 0.16% | 1541 |
| chr7 | 220648 | 0.14% | 1245 |
| chr8 | 161511 | 0.11% | 925 |
| chr9 | 184858 | 0.13% | 1045 |
| chr10 | 190012 | 0.14% | 1098 |
| chr11 | 237604 | 0.18% | 1326 |
| chr12 | 252141 | 0.19% | 1397 |
| chr13 | 95607 | 0.08% | 547 |
| chr14 | 161419 | 0.15% | 916 |
| chr15 | 149959 | 0.15% | 863 |
| chr16 | 195004 | 0.22% | 1090 |
| chr17 | 281369 | 0.34% | 1601 |
| chr18 | 66942 | 0.08% | 386 |
| chr19 | 354361 | 0.60% | 1881 |
| chr20 | 124941 | 0.19% | 726 |
| chr21 | 55997 | 0.12% | 315 |
| chr22 | 114983 | 0.23% | 656 |
| chrX | 141606 | 0.09% | 775 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 26451 | 3 | 620 | 177.18 | 177 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF371IEL.bed.gz | 286.4 KB | 668960bd526bf1f493017208596fa215 |
| ENCFF371IEL.tabix.bed.gz | 255.62 KB | 5da9bb26992db8d4aad588d7ef94cfed |
| ENCFF371IEL.tabix.bed.gz.tbi | 159.49 KB | 4cbb07f9db23c3b40fd6a79f113dfdf3 |
| genomic_resource.yaml | 2.41 KB | b86f85d29e5551825f7ca50f6c050242 |
| statistics/ |