Resource

Id DNase-seq/ENCSR564XXOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR564XXO [biosample_summary="Homo sapiens suppressor macrophage male adult (21 years) treated with lipopolysaccharide for 1 hour"]
Description
Labels
  • accession: ENCSR564XXO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000862/
  • biosample_summary: Homo sapiens suppressor macrophage male adult (21 years) treated with lipopolysaccharide for 1 hour
  • date_created: 2021-11-18T17:43:08.087145+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR564XXO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years) treated with lipopolysaccharide for 1 hour
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR011VJK.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR564XXO float

DNase-seq_ENCSR564XXO
DNase-seq ENCSR564XXO [biosample_summary="Homo sapiens suppressor macrophage male adult (21 years) treated with lipopolysaccharide for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR564XXO [0.0179, 28.3]
n
40,994,998
mean
1.57
sd
2.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 409949981.27% 230993
chr1 3983379 1.60% 22407
chr2 3324501 1.37% 18897
chr3 2742036 1.38% 15572
chr4 1965258 1.03% 11473
chr5 2210121 1.22% 12459
chr6 2614692 1.53% 14664
chr7 2072216 1.30% 11750
chr8 1890659 1.30% 10678
chr9 1753538 1.27% 9937
chr10 1989184 1.49% 11144
chr11 2010020 1.49% 11305
chr12 2154072 1.62% 12176
chr13 937994 0.82% 5353
chr14 1331993 1.24% 7441
chr15 1346465 1.32% 7534
chr16 1278072 1.41% 7217
chr17 1794623 2.16% 9856
chr18 829165 1.03% 4747
chr19 1400547 2.39% 7620
chr20 1123266 1.74% 6284
chr21 524617 1.12% 2904
chr22 727347 1.43% 4085
chrX 955761 0.61% 5286
chrY 35472 0.06% 204
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 230993 2 1220 177.47 180
global segment-length histogram

Files

Filename Size md5
ENCFF607DEQ.bed.gz 2.47 MB 4e2f0ee575f3792c651c1e0f2f154970
ENCFF607DEQ.tabix.bed.gz 2.27 MB 6b0c08c09f84de88cb67dc538770f01e
ENCFF607DEQ.tabix.bed.gz.tbi 552.71 KB 332f41d06edbfbf7cb90838300c4015a
genomic_resource.yaml 1.55 KB 88f5bec3fb9d7590c8fe0fe5bd44847b
statistics/