Resource

Id DNase-seq/ENCSR562ACYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR562ACY [biosample_summary="Homo sapiens fibroblast of skin of left biceps male embryo (97 days)"]
Description
Labels
  • accession: ENCSR562ACY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000521/
  • biosample_summary: Homo sapiens fibroblast of skin of left biceps male embryo (97 days)
  • date_created: 2015-09-16T21:42:12.689710+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR562ACY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR562ACY float

DNase-seq_ENCSR562ACY
DNase-seq ENCSR562ACY [biosample_summary="Homo sapiens fibroblast of skin of left biceps male embryo (97 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR562ACY [3, 2.42e+03]
n
18,681,294
mean
84.2
sd
118

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 186812940.58% 124376
chr1 1702028 0.68% 11329
chr2 1601550 0.66% 10661
chr3 1314750 0.66% 8752
chr4 1085630 0.57% 7222
chr5 1161450 0.64% 7731
chr6 1195650 0.70% 7962
chr7 926700 0.58% 6172
chr8 900450 0.62% 5990
chr9 795750 0.57% 5298
chr10 878840 0.66% 5849
chr11 910999 0.67% 6064
chr12 925844 0.69% 6170
chr13 560850 0.49% 3730
chr14 580200 0.54% 3866
chr15 615241 0.60% 4099
chr16 506250 0.56% 3372
chr17 660450 0.79% 4402
chr18 462450 0.58% 3078
chr19 446550 0.76% 2976
chr20 433650 0.67% 2888
chr21 243588 0.52% 1623
chr22 255374 0.50% 1703
chrX 495750 0.32% 3297
chrY 21300 0.04% 142
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 124376 49 450 150.2 150
global segment-length histogram

Files

Filename Size md5
ENCFF336MQK.bed.gz 1.18 MB a29568d5da5c2a20bbcb60bf137a2d39
ENCFF336MQK.tabix.bed.gz 1.02 MB 0c6b852dc07e10446194eb252d22b262
ENCFF336MQK.tabix.bed.gz.tbi 543.12 KB d534c3407315e4b1d639c160aefb745d
genomic_resource.yaml 1.44 KB 20f7173ff24fbc9ab38bbffdf2002cab
statistics/