Resource
| Id | DNase-seq/ENCSR556ARS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR556ARS [biosample_summary="Homo sapiens central memory CD4-positive, alpha-beta T cell male adult (42 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: peaks audit_warning: Alignment file {ENCFF386FCB|/files/ENCFF386FCB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 42663662 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR556ARS | float |
DNase-seq_ENCSR556ARS |
DNase-seq ENCSR556ARS [biosample_summary="Homo sapiens central memory CD4-positive, alpha-beta T cell male adult (42 years)"]
|
 |
[0.259, 45.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7090235 | 0.22% | 36736 |
| chr1 | 727110 | 0.29% | 3750 |
| chr2 | 486996 | 0.20% | 2543 |
| chr3 | 382470 | 0.19% | 1985 |
| chr4 | 242643 | 0.13% | 1219 |
| chr5 | 310714 | 0.17% | 1626 |
| chr6 | 411615 | 0.24% | 2131 |
| chr7 | 326531 | 0.20% | 1682 |
| chr8 | 258734 | 0.18% | 1349 |
| chr9 | 271433 | 0.20% | 1413 |
| chr10 | 314165 | 0.23% | 1648 |
| chr11 | 365901 | 0.27% | 1907 |
| chr12 | 365187 | 0.27% | 1887 |
| chr13 | 145357 | 0.13% | 728 |
| chr14 | 251046 | 0.23% | 1291 |
| chr15 | 227787 | 0.22% | 1203 |
| chr16 | 295980 | 0.33% | 1542 |
| chr17 | 447663 | 0.54% | 2317 |
| chr18 | 108282 | 0.13% | 565 |
| chr19 | 479893 | 0.82% | 2414 |
| chr20 | 198379 | 0.31% | 1045 |
| chr21 | 83734 | 0.18% | 440 |
| chr22 | 180192 | 0.35% | 952 |
| chrX | 199625 | 0.13% | 1057 |
| chrY | 8798 | 0.02% | 42 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 36736 | 3 | 900 | 193.01 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF404RWR.bed.gz | 404.85 KB | 4957f892ffc2f7d3a6e57382fbf1edb7 |
| ENCFF404RWR.tabix.bed.gz | 368.99 KB | 307b7521c5c43b8a836af19ef8d45e2c |
| ENCFF404RWR.tabix.bed.gz.tbi | 194.3 KB | c0407bc3cd0b2357e5ea5463052ae1eb |
| genomic_resource.yaml | 1.92 KB | d2129828d892034ece41ca071d0c984a |
| statistics/ |