Resource

Id DNase-seq/ENCSR554WUJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR554WUJ [biosample_summary="Homo sapiens renal pelvis tissue female embryo (103 days)"]
Description
Labels
  • accession: ENCSR554WUJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001224/
  • biosample_summary: Homo sapiens renal pelvis tissue female embryo (103 days)
  • date_created: 2015-09-16T21:42:29.891629+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR554WUJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (103 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR554WUJ float

DNase-seq_ENCSR554WUJ

DNase-seq ENCSR554WUJ [biosample_summary="Homo sapiens renal pelvis tissue female embryo (103 days)"]
HISTOGRAM FOR DNase-seq_ENCSR554WUJ [0.144, 24.5]
n
18,492,092
mean
2.06
sd
2.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 184920920.57% 97962
chr1 1671678 0.67% 8806
chr2 1473593 0.61% 7808
chr3 1215643 0.61% 6456
chr4 995496 0.52% 5232
chr5 1026254 0.57% 5460
chr6 1103944 0.65% 5818
chr7 947175 0.59% 5071
chr8 845913 0.58% 4506
chr9 785994 0.57% 4126
chr10 913379 0.68% 4833
chr11 968143 0.72% 5100
chr12 944695 0.71% 4956
chr13 494456 0.43% 2635
chr14 597580 0.56% 3144
chr15 596579 0.58% 3191
chr16 584246 0.65% 3144
chr17 735602 0.88% 3903
chr18 447326 0.56% 2386
chr19 657018 1.12% 3339
chr20 476550 0.74% 2565
chr21 196046 0.42% 1054
chr22 308421 0.61% 1693
chrX 505924 0.32% 2733
chrY 437 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97962 3 1175 188.77 180
global segment-length histogram

Files

Filename Size md5
ENCFF612VPK.bed.gz 1.01 MB 816e318ff8344b40359c11616d1a7d96
ENCFF612VPK.tabix.bed.gz 935.03 KB f9850c4af018447ef6c365700afcdb28
ENCFF612VPK.tabix.bed.gz.tbi 458.83 KB c60d7fb663692366634101df8d3bec47
genomic_resource.yaml 1.23 KB 970c6e61976e63ffebb04369b6ca5ee4
statistics/