Resource

Id DNase-seq/ENCSR553WJBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR553WJB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR553WJB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours
  • date_created: 2020-04-19T18:36:52.888291+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR553WJB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR553WJB float

DNase-seq_ENCSR553WJB
DNase-seq ENCSR553WJB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR553WJB [0.104, 66.7]
n
15,557,619
mean
5.07
sd
7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 155576190.48% 82668
chr1 1553126 0.62% 8197
chr2 1110521 0.46% 5895
chr3 854809 0.43% 4530
chr4 566342 0.30% 2997
chr5 696786 0.38% 3749
chr6 902853 0.53% 4796
chr7 726629 0.46% 3831
chr8 605155 0.42% 3253
chr9 652635 0.47% 3469
chr10 713094 0.53% 3789
chr11 785939 0.58% 4211
chr12 780831 0.59% 4109
chr13 319331 0.28% 1734
chr14 520259 0.49% 2812
chr15 520955 0.51% 2808
chr16 642537 0.71% 3379
chr17 907303 1.09% 4748
chr18 266468 0.33% 1447
chr19 936300 1.60% 4877
chr20 447891 0.70% 2433
chr21 185217 0.40% 988
chr22 386988 0.76% 2050
chrX 456870 0.29% 2463
chrY 18780 0.03% 103
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82668 1 860 188.19 180
global segment-length histogram

Files

Filename Size md5
ENCFF254BRU.bed.gz 920.97 KB 55a892452064bad265e915a75477142d
ENCFF254BRU.tabix.bed.gz 843.49 KB 77ec5260bf4d6628fb224b4fb2185aaa
ENCFF254BRU.tabix.bed.gz.tbi 321.48 KB 3bbf79447380ab937cc214df2f294a92
genomic_resource.yaml 1.83 KB 99c4d78e303aa4d9de2415f47ff6759c
statistics/