Resource

Id DNase-seq/ENCSR552XJIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR552XJI [biosample_summary="Homo sapiens placenta tissue embryo (56 days) and embryo (59 days)"]
Description
Labels
  • accession: ENCSR552XJI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue embryo (56 days) and embryo (59 days)
  • date_created: 2017-06-26T19:00:46.450458+00:00
  • date_released: 2017-12-13
  • doi: 10.17989/ENCSR552XJI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: embryo (56 days) embryo (59 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR552XJI float

DNase-seq_ENCSR552XJI
DNase-seq ENCSR552XJI [biosample_summary="Homo sapiens placenta tissue embryo (56 days) and embryo (59 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR552XJI [4, 2.52e+04]
n
35,552,967
mean
135
sd
190

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 355529671.11% 236296
chr1 3337385 1.34% 22194
chr2 3127757 1.29% 20784
chr3 2025141 1.02% 13453
chr4 1394109 0.73% 9261
chr5 1747535 0.96% 11610
chr6 1783016 1.04% 11858
chr7 1924633 1.21% 12806
chr8 1461622 1.01% 9709
chr9 1616218 1.17% 10745
chr10 2090627 1.56% 13893
chr11 1938424 1.43% 12878
chr12 1477232 1.11% 9813
chr13 715264 0.63% 4760
chr14 1264105 1.18% 8398
chr15 1297624 1.27% 8617
chr16 1276783 1.41% 8490
chr17 1528844 1.84% 10171
chr18 761082 0.95% 5057
chr19 1343700 2.29% 8935
chr20 1126120 1.75% 7491
chr21 537589 1.15% 3565
chr22 991154 1.95% 6580
chrX 711989 0.46% 4729
chrY 75014 0.13% 499
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 236296 3 582 150.46 150
global segment-length histogram

Files

Filename Size md5
ENCFF548SVP.bed.gz 2.21 MB fcc0acdb6118e9e81e16ca960c6853db
ENCFF548SVP.tabix.bed.gz 1.9 MB 5455ee99bb0f6e64be0e1f5b3467226f
ENCFF548SVP.tabix.bed.gz.tbi 514.5 KB 863279f5958a6e48af94d8931a1a2724
genomic_resource.yaml 1.45 KB 38ea3a2a33296cdbc0b24dedf8a041e9
statistics/