Resource

Id DNase-seq/ENCSR552TPHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR552TPH [biosample_summary="Homo sapiens T-cell female adult (53 years)"]
Description
Labels
  • accession: ENCSR552TPH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (53 years)
  • date_created: 2020-04-12T19:00:06.655169+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR552TPH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR552TPH float

DNase-seq_ENCSR552TPH

DNase-seq ENCSR552TPH [biosample_summary="Homo sapiens T-cell female adult (53 years)"]
HISTOGRAM FOR DNase-seq_ENCSR552TPH [0.211, 55.6]
n
8,570,135
mean
5.72
sd
6.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 85701350.27% 48820
chr1 869888 0.35% 4955
chr2 598827 0.25% 3419
chr3 466591 0.24% 2687
chr4 298247 0.16% 1701
chr5 386311 0.21% 2202
chr6 508737 0.30% 2894
chr7 391129 0.25% 2237
chr8 309408 0.21% 1763
chr9 336407 0.24% 1924
chr10 383004 0.29% 2198
chr11 436389 0.32% 2510
chr12 433256 0.33% 2488
chr13 174958 0.15% 997
chr14 302601 0.28% 1719
chr15 270022 0.26% 1544
chr16 353600 0.39% 1992
chr17 531599 0.64% 3006
chr18 132388 0.16% 774
chr19 566910 0.97% 3115
chr20 246106 0.38% 1430
chr21 100167 0.21% 577
chr22 211463 0.42% 1210
chrX 262023 0.17% 1477
chrY 104 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48820 11 760 175.55 168
global segment-length histogram

Files

Filename Size md5
ENCFF828FGS.bed.gz 535.01 KB 77d99c01aff3998a06804a39f97e1ecc
ENCFF828FGS.tabix.bed.gz 488.69 KB 0a5a75eeff6b569d801e9c2f578bb09a
ENCFF828FGS.tabix.bed.gz.tbi 229.84 KB 37374671a3a0f473fbe11471b8a6a200
genomic_resource.yaml 1.19 KB e99085597e3c0d679c6d9b8ac88b6276
statistics/