Resource

Id DNase-seq/ENCSR551LAHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR551LAH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR551LAH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours
  • date_created: 2020-04-19T18:36:58.825097+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR551LAH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR551LAH float

DNase-seq_ENCSR551LAH
DNase-seq ENCSR551LAH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR551LAH [0.381, 47.7]
n
8,059,866
mean
6.65
sd
6.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 80598660.25% 44742
chr1 820611 0.33% 4552
chr2 564413 0.23% 3146
chr3 454325 0.23% 2527
chr4 295942 0.16% 1647
chr5 367361 0.20% 2062
chr6 477314 0.28% 2648
chr7 362862 0.23% 2027
chr8 304671 0.21% 1717
chr9 327274 0.24% 1816
chr10 363344 0.27% 2050
chr11 399733 0.30% 2222
chr12 418646 0.31% 2306
chr13 168586 0.15% 923
chr14 283169 0.26% 1540
chr15 264905 0.26% 1505
chr16 324591 0.36% 1803
chr17 470309 0.56% 2588
chr18 129234 0.16% 737
chr19 525813 0.90% 2798
chr20 223088 0.35% 1271
chr21 94526 0.20% 534
chr22 189847 0.37% 1048
chrX 219990 0.14% 1222
chrY 9312 0.02% 53
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44742 11 680 180.14 180
global segment-length histogram

Files

Filename Size md5
ENCFF317LRK.bed.gz 489.57 KB 396376e0c2090c5c33839cd495a4d755
ENCFF317LRK.tabix.bed.gz 442.02 KB 47de642060ec38569a29359bdee3ee8f
ENCFF317LRK.tabix.bed.gz.tbi 232.22 KB 1d28ad7336bd8e15df072c3c0a33172b
genomic_resource.yaml 2.44 KB 6ef77dc45b31a40b5845f76ad28a1fa6
statistics/