Resource

Id DNase-seq/ENCSR550UWMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR550UWM [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (97 days)"]
Description
Labels
  • accession: ENCSR550UWM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0005270/
  • biosample_summary: Homo sapiens renal cortex interstitium tissue male embryo (97 days)
  • date_created: 2015-09-16T21:42:33.140275+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR550UWM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR550UWM float

DNase-seq_ENCSR550UWM
DNase-seq ENCSR550UWM [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (97 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR550UWM [0.19, 24.8]
n
8,554,793
mean
4.1
sd
3.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 85547930.27% 46272
chr1 805076 0.32% 4321
chr2 655853 0.27% 3585
chr3 559992 0.28% 3024
chr4 425406 0.22% 2283
chr5 467916 0.26% 2512
chr6 508565 0.30% 2730
chr7 437055 0.27% 2362
chr8 378694 0.26% 2048
chr9 357293 0.26% 1946
chr10 396971 0.30% 2173
chr11 424647 0.31% 2326
chr12 431294 0.32% 2332
chr13 204977 0.18% 1118
chr14 278532 0.26% 1476
chr15 287350 0.28% 1547
chr16 289808 0.32% 1608
chr17 370120 0.44% 1993
chr18 188090 0.23% 1040
chr19 415348 0.71% 2112
chr20 218618 0.34% 1218
chr21 86961 0.19% 496
chr22 154701 0.30% 855
chrX 205437 0.13% 1133
chrY 6089 0.01% 34
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46272 1 840 184.88 180
global segment-length histogram

Files

Filename Size md5
ENCFF912FDI.bed.gz 487.87 KB 32b220ad072d8df6c03823f937bdf1c2
ENCFF912FDI.tabix.bed.gz 435.53 KB dee6c32093a3d3954414ebeebf9598a6
ENCFF912FDI.tabix.bed.gz.tbi 259.45 KB a7cbbda174062d5a575f6c9d01a83425
genomic_resource.yaml 1.87 KB d8ff73c335fb9fffb322517911bc1a47
statistics/