Resource

Id DNase-seq/ENCSR549NRKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR549NRK [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR549NRK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue male adult (54 years)
  • date_created: 2019-07-29T20:41:32.978468+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR549NRK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR549NRK float

DNase-seq_ENCSR549NRK
DNase-seq ENCSR549NRK [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR549NRK [6, 2.93e+03]
n
17,605,185
mean
125
sd
149

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 176051850.55% 117225
chr1 1678919 0.67% 11181
chr2 1354135 0.56% 9019
chr3 1100519 0.55% 7318
chr4 794555 0.42% 5287
chr5 907392 0.50% 6046
chr6 996110 0.58% 6636
chr7 855626 0.54% 5693
chr8 810455 0.56% 5396
chr9 798508 0.58% 5318
chr10 869264 0.65% 5790
chr11 928343 0.69% 6181
chr12 830495 0.62% 5530
chr13 407316 0.36% 2713
chr14 578234 0.54% 3852
chr15 612209 0.60% 4077
chr16 650226 0.72% 4330
chr17 816980 0.98% 5442
chr18 381793 0.48% 2545
chr19 648393 1.11% 4312
chr20 511632 0.79% 3409
chr21 189900 0.41% 1265
chr22 397509 0.78% 2647
chrX 461202 0.30% 3068
chrY 25470 0.04% 170
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117225 13 450 150.18 150
global segment-length histogram

Files

Filename Size md5
ENCFF515ZIO.bed.gz 1.13 MB b4f420caf6136fa6942e4d1bcf4399cc
ENCFF515ZIO.tabix.bed.gz 993.92 KB 09ed1ef2282d2992bd3d511dea70d669
ENCFF515ZIO.tabix.bed.gz.tbi 466.27 KB de09302862e4a3c94a7babd30df335fd
genomic_resource.yaml 1.99 KB ae8eabf8721adbf5191f5fb7af497509
statistics/