Resource

Id DNase-seq/ENCSR548KXHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR548KXH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"]
Description
Labels
  • accession: ENCSR548KXH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours
  • date_created: 2020-04-19T18:36:58.981736+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR548KXH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR548KXH float

DNase-seq_ENCSR548KXH
DNase-seq ENCSR548KXH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR548KXH [0.275, 39.8]
n
7,552,604
mean
6.26
sd
5.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75526040.23% 41003
chr1 770452 0.31% 4173
chr2 525572 0.22% 2859
chr3 415990 0.21% 2261
chr4 270964 0.14% 1454
chr5 337646 0.19% 1852
chr6 443431 0.26% 2397
chr7 343279 0.22% 1857
chr8 277406 0.19% 1549
chr9 307173 0.22% 1665
chr10 332226 0.25% 1811
chr11 376994 0.28% 2065
chr12 394407 0.30% 2135
chr13 154725 0.14% 822
chr14 260872 0.24% 1416
chr15 254917 0.25% 1404
chr16 316503 0.35% 1720
chr17 454161 0.55% 2436
chr18 118172 0.15% 643
chr19 507817 0.87% 2658
chr20 205213 0.32% 1138
chr21 89169 0.19% 498
chr22 183482 0.36% 1019
chrX 205448 0.13% 1134
chrY 6585 0.01% 37
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41003 2 800 184.2 180
global segment-length histogram

Files

Filename Size md5
ENCFF943MCB.bed.gz 446.58 KB 0bc96e2fe3e6652b2fbac542256a217d
ENCFF943MCB.tabix.bed.gz 403.69 KB b36b76142072cd6db34f9618deb9adba
ENCFF943MCB.tabix.bed.gz.tbi 213.85 KB 16df2dc4e1aa51f3c1ad5aa16aed51d1
genomic_resource.yaml 2.65 KB eb1f87a415be7a8a61ebd3d6c27244e8
statistics/