Resource

Id DNase-seq/ENCSR546FUCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR546FUC [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR546FUC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)
  • date_created: 2020-04-20T23:45:50.223986+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR546FUC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR546FUC float

DNase-seq_ENCSR546FUC
DNase-seq ENCSR546FUC [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR546FUC [0.174, 71.1]
n
8,208,500
mean
6.37
sd
7.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82085000.26% 44436
chr1 831275 0.33% 4494
chr2 563606 0.23% 3068
chr3 443689 0.22% 2391
chr4 276906 0.15% 1494
chr5 367150 0.20% 1984
chr6 474901 0.28% 2557
chr7 373619 0.23% 2020
chr8 307562 0.21% 1656
chr9 326736 0.24% 1775
chr10 360089 0.27% 1960
chr11 427132 0.32% 2309
chr12 420928 0.32% 2286
chr13 163292 0.14% 877
chr14 293285 0.27% 1571
chr15 265565 0.26% 1470
chr16 335509 0.37% 1825
chr17 514276 0.62% 2764
chr18 124030 0.15% 686
chr19 551012 0.94% 2917
chr20 230716 0.36% 1279
chr21 95955 0.21% 525
chr22 206895 0.41% 1131
chrX 246337 0.16% 1353
chrY 8035 0.01% 44
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44436 1 780 184.73 180
global segment-length histogram

Files

Filename Size md5
ENCFF384OFO.bed.gz 499.94 KB 6897edc1c93d0074e53017fd7a46a78a
ENCFF384OFO.tabix.bed.gz 454.72 KB 6c2dd52a5d83ae96449d32fd8d590a2c
ENCFF384OFO.tabix.bed.gz.tbi 216.86 KB 273c652a2101c356b343799992fa0288
genomic_resource.yaml 1.26 KB fe02a62a2e8b74d26f2ee37797604632
statistics/