Resource

Id DNase-seq/ENCSR543YPHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR543YPH [biosample_summary="Homo sapiens left kidney tissue male embryo (115 days)"]
Description
Labels
  • accession: ENCSR543YPH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004538/
  • biosample_summary: Homo sapiens left kidney tissue male embryo (115 days)
  • date_created: 2015-09-16T21:43:04.409294+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR543YPH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (115 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR543YPH float

DNase-seq_ENCSR543YPH
DNase-seq ENCSR543YPH [biosample_summary="Homo sapiens left kidney tissue male embryo (115 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR543YPH [2, 2.65e+03]
n
15,722,597
mean
71
sd
94.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 157225970.49% 104668
chr1 1420905 0.57% 9456
chr2 1240962 0.51% 8256
chr3 996125 0.50% 6630
chr4 815370 0.43% 5423
chr5 850968 0.47% 5663
chr6 944120 0.55% 6283
chr7 806456 0.51% 5368
chr8 704642 0.49% 4688
chr9 648299 0.47% 4317
chr10 776734 0.58% 5175
chr11 822179 0.61% 5475
chr12 770050 0.58% 5129
chr13 430255 0.38% 2864
chr14 506547 0.47% 3372
chr15 529455 0.52% 3528
chr16 533550 0.59% 3553
chr17 668967 0.80% 4456
chr18 365293 0.45% 2431
chr19 582835 0.99% 3884
chr20 420150 0.65% 2799
chr21 183000 0.39% 1219
chr22 295035 0.58% 1964
chrX 394950 0.25% 2630
chrY 15750 0.03% 105
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 104668 1 450 150.21 150
global segment-length histogram

Files

Filename Size md5
ENCFF567LLQ.bed.gz 1015.32 KB ddae2e1f0cb5243b9c91d3f343e7c96d
ENCFF567LLQ.tabix.bed.gz 874.13 KB 80c22cf81a6fc712c2f13c3f4242f3ce
ENCFF567LLQ.tabix.bed.gz.tbi 478.89 KB 131a7e07d8d18c27df454c85d8025d72
genomic_resource.yaml 1.39 KB 83ab73cca711c1dafb46381296d04982
statistics/