Resource

Id DNase-seq/ENCSR542GKIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR542GKI [biosample_summary="Homo sapiens T-helper 9 cell female adult (25 years)"]
Description
Labels
  • accession: ENCSR542GKI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002061/
  • biosample_summary: Homo sapiens T-helper 9 cell female adult (25 years)
  • date_created: 2020-04-13T17:34:06.041726+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR542GKI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR542GKI float

DNase-seq_ENCSR542GKI

DNase-seq ENCSR542GKI [biosample_summary="Homo sapiens T-helper 9 cell female adult (25 years)"]
HISTOGRAM FOR DNase-seq_ENCSR542GKI [0.155, 65.7]
n
9,002,817
mean
6.76
sd
7.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90028170.28% 47024
chr1 918104 0.37% 4786
chr2 603907 0.25% 3176
chr3 477370 0.24% 2498
chr4 302249 0.16% 1558
chr5 393129 0.22% 2053
chr6 511160 0.30% 2669
chr7 408926 0.26% 2131
chr8 327458 0.23% 1769
chr9 364075 0.26% 1900
chr10 402623 0.30% 2110
chr11 458386 0.34% 2420
chr12 461222 0.35% 2417
chr13 180032 0.16% 918
chr14 323343 0.30% 1681
chr15 288301 0.28% 1527
chr16 381192 0.42% 1966
chr17 570363 0.69% 2957
chr18 140791 0.18% 747
chr19 628938 1.07% 3189
chr20 254584 0.40% 1356
chr21 101087 0.22% 536
chr22 225990 0.44% 1195
chrX 279587 0.18% 1465
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47024 9 760 191.45 180
global segment-length histogram

Files

Filename Size md5
ENCFF036BCW.bed.gz 526.97 KB 60ca9d27da0d11ecf35adfe769ebca97
ENCFF036BCW.tabix.bed.gz 482.06 KB 0bac3521b004616bee036d8043ee898b
ENCFF036BCW.tabix.bed.gz.tbi 218.29 KB 4681466be906298730a7eb5fb5b909e3
genomic_resource.yaml 1.22 KB 4700c545b09cc2c8ed19fa23ed8e2a1f
statistics/