Resource
| Id | DNase-seq/ENCSR541ZOU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR541ZOU [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF129MZG|/files/ENCFF129MZG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 42452762 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR541ZOU | float |
DNase-seq_ENCSR541ZOU |
DNase-seq ENCSR541ZOU [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
|
 |
[0.307, 24.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8365510 | 0.26% | 45645 |
| chr1 | 843356 | 0.34% | 4579 |
| chr2 | 589571 | 0.24% | 3222 |
| chr3 | 468386 | 0.24% | 2579 |
| chr4 | 301792 | 0.16% | 1635 |
| chr5 | 380303 | 0.21% | 2106 |
| chr6 | 491978 | 0.29% | 2660 |
| chr7 | 378310 | 0.24% | 2092 |
| chr8 | 320458 | 0.22% | 1770 |
| chr9 | 354205 | 0.26% | 1910 |
| chr10 | 374022 | 0.28% | 2075 |
| chr11 | 428776 | 0.32% | 2346 |
| chr12 | 439569 | 0.33% | 2372 |
| chr13 | 168390 | 0.15% | 904 |
| chr14 | 280234 | 0.26% | 1546 |
| chr15 | 276671 | 0.27% | 1513 |
| chr16 | 342232 | 0.38% | 1878 |
| chr17 | 492583 | 0.59% | 2683 |
| chr18 | 135011 | 0.17% | 750 |
| chr19 | 550865 | 0.94% | 2876 |
| chr20 | 228425 | 0.35% | 1271 |
| chr21 | 91842 | 0.20% | 510 |
| chr22 | 196269 | 0.39% | 1074 |
| chrX | 224707 | 0.14% | 1255 |
| chrY | 7555 | 0.01% | 39 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 45645 | 2 | 720 | 183.27 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF754ZLR.bed.gz | 495.27 KB | 936af78e0d3d3acd5938c21acd433804 |
| ENCFF754ZLR.tabix.bed.gz | 449.44 KB | f8cd2adfccc8f083d191e22ae0d4a412 |
| ENCFF754ZLR.tabix.bed.gz.tbi | 233.67 KB | 125c6002978a533062b0e4f82cee2a4b |
| genomic_resource.yaml | 2.21 KB | ae9ba57b2ccc43aa6498c91aefb1c517 |
| statistics/ |