Resource

Id DNase-seq/ENCSR541PUYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR541PUY [biosample_summary="Homo sapiens T-cell male adult (30 years)"]
Description
Labels
  • accession: ENCSR541PUY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (30 years)
  • date_created: 2020-03-30T19:01:14.994154+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR541PUY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR541PUY float

DNase-seq_ENCSR541PUY

DNase-seq ENCSR541PUY [biosample_summary="Homo sapiens T-cell male adult (30 years)"]
HISTOGRAM FOR DNase-seq_ENCSR541PUY [0.125, 55]
n
7,381,868
mean
5.25
sd
6.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 73818680.23% 40883
chr1 748632 0.30% 4134
chr2 502456 0.21% 2816
chr3 394802 0.20% 2187
chr4 260960 0.14% 1453
chr5 324067 0.18% 1783
chr6 426009 0.25% 2359
chr7 344079 0.22% 1908
chr8 299425 0.21% 1675
chr9 293552 0.21% 1635
chr10 320833 0.24% 1809
chr11 386076 0.29% 2138
chr12 375344 0.28% 2070
chr13 143889 0.13% 790
chr14 271268 0.25% 1519
chr15 229814 0.23% 1284
chr16 306219 0.34% 1700
chr17 444612 0.53% 2459
chr18 105718 0.13% 594
chr19 495457 0.85% 2619
chr20 200554 0.31% 1130
chr21 100411 0.21% 551
chr22 175900 0.35% 992
chrX 223139 0.14% 1232
chrY 8652 0.02% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40883 4 780 180.56 180
global segment-length histogram

Files

Filename Size md5
ENCFF089TRW.bed.gz 459.85 KB c1f3dc2b7193e302cc6c8546b191c7a1
ENCFF089TRW.tabix.bed.gz 418.02 KB 3673cce4812a80f0f72818bc83588def
ENCFF089TRW.tabix.bed.gz.tbi 200.84 KB 05da0fd2551df4cefb55dde7e71d3ecd
genomic_resource.yaml 1.18 KB 3363eb37d164cbffad13747329f26807
statistics/