Resource

Id DNase-seq/ENCSR541JMKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR541JMK [biosample_summary="Homo sapiens adrenal gland tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR541JMK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002369/
  • biosample_summary: Homo sapiens adrenal gland tissue female adult (47 years)
  • date_created: 2019-11-01T19:05:04.282637+00:00
  • date_released: 2020-09-19
  • doi: 10.17989/ENCSR541JMK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR541JMK float

DNase-seq_ENCSR541JMK

DNase-seq ENCSR541JMK [biosample_summary="Homo sapiens adrenal gland tissue female adult (47 years)"]
HISTOGRAM FOR DNase-seq_ENCSR541JMK [0.0425, 51.1]
n
24,048,421
mean
2.27
sd
3.58

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 240484210.75% 129904
chr1 2304409 0.93% 12415
chr2 1855111 0.77% 10059
chr3 1354083 0.68% 7451
chr4 833813 0.44% 4621
chr5 1148588 0.63% 6317
chr6 1177910 0.69% 6497
chr7 1148258 0.72% 6284
chr8 1063054 0.73% 5814
chr9 1136898 0.82% 6113
chr10 1170544 0.87% 6383
chr11 1393311 1.03% 7346
chr12 1138477 0.85% 6184
chr13 452477 0.40% 2512
chr14 818433 0.76% 4370
chr15 792295 0.78% 4325
chr16 955454 1.06% 5069
chr17 1359073 1.63% 7172
chr18 437028 0.54% 2416
chr19 1172324 2.00% 5945
chr20 751213 1.17% 4051
chr21 325110 0.70% 1767
chr22 699463 1.38% 3656
chrX 559947 0.36% 3126
chrY 1148 <0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129904 1 980 185.12 180
global segment-length histogram

Files

Filename Size md5
ENCFF559POI.bed.gz 1.4 MB 75637b1bae7e7d358178278d33d2f7f4
ENCFF559POI.tabix.bed.gz 1.28 MB 6609f18b9ea954a4d57b0d154f3b6953
ENCFF559POI.tabix.bed.gz.tbi 427.08 KB 2e38262106c4cc82c36591e95ec2f4d6
genomic_resource.yaml 1.23 KB 3f72fe6de8e6cfdcf1462b9658d98be5
statistics/