Resource

Id DNase-seq/ENCSR537TXPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR537TXP [biosample_summary="Homo sapiens T-helper 17 cell male adult (50 years)"]
Description
Labels
  • accession: ENCSR537TXP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000899/
  • biosample_summary: Homo sapiens T-helper 17 cell male adult (50 years)
  • date_created: 2021-08-23T23:10:45.704078+00:00
  • date_released: 2021-09-02
  • doi: 10.17989/ENCSR537TXP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (50 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR537TXP float

DNase-seq_ENCSR537TXP

DNase-seq ENCSR537TXP [biosample_summary="Homo sapiens T-helper 17 cell male adult (50 years)"]
HISTOGRAM FOR DNase-seq_ENCSR537TXP [0.107, 38.7]
n
8,315,360
mean
4.68
sd
4.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 83153600.26% 43550
chr1 838189 0.34% 4358
chr2 561701 0.23% 2940
chr3 439707 0.22% 2300
chr4 283458 0.15% 1474
chr5 369685 0.20% 1924
chr6 466630 0.27% 2435
chr7 376300 0.24% 1986
chr8 300247 0.21% 1622
chr9 339618 0.25% 1776
chr10 366482 0.27% 1944
chr11 464833 0.34% 2456
chr12 413448 0.31% 2169
chr13 162775 0.14% 836
chr14 311939 0.29% 1625
chr15 272326 0.27% 1450
chr16 348658 0.39% 1813
chr17 515192 0.62% 2678
chr18 130910 0.16% 689
chr19 563911 0.96% 2854
chr20 233331 0.36% 1258
chr21 96339 0.21% 508
chr22 205862 0.41% 1111
chrX 244761 0.16% 1298
chrY 9058 0.02% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43550 2 880 190.94 180
global segment-length histogram

Files

Filename Size md5
ENCFF298ANC.bed.gz 492.79 KB bc15886d918b78d80f1defc570b7c86a
ENCFF298ANC.tabix.bed.gz 448.86 KB bee130a739be1cafb479280ea292bba2
ENCFF298ANC.tabix.bed.gz.tbi 212.18 KB c50002072a7f36701a66175d407fd20c
genomic_resource.yaml 1.21 KB 73edad0c8026edcfe13642a9ceb823ad
statistics/