Resource
| Id | DNase-seq/ENCSR534OJE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR534OJE [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF360PGB|/files/ENCFF360PGB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28076252 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR534OJE | float |
DNase-seq_ENCSR534OJE |
DNase-seq ENCSR534OJE [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
|
 |
[0.321, 65.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6587119 | 0.20% | 36708 |
| chr1 | 663961 | 0.27% | 3711 |
| chr2 | 461636 | 0.19% | 2591 |
| chr3 | 360357 | 0.18% | 2027 |
| chr4 | 231598 | 0.12% | 1290 |
| chr5 | 281424 | 0.16% | 1577 |
| chr6 | 394706 | 0.23% | 2194 |
| chr7 | 304122 | 0.19% | 1706 |
| chr8 | 242500 | 0.17% | 1367 |
| chr9 | 261856 | 0.19% | 1451 |
| chr10 | 288478 | 0.22% | 1625 |
| chr11 | 335232 | 0.25% | 1864 |
| chr12 | 344519 | 0.26% | 1908 |
| chr13 | 131557 | 0.12% | 735 |
| chr14 | 230698 | 0.22% | 1277 |
| chr15 | 213454 | 0.21% | 1205 |
| chr16 | 275352 | 0.30% | 1514 |
| chr17 | 397677 | 0.48% | 2215 |
| chr18 | 99015 | 0.12% | 568 |
| chr19 | 460099 | 0.78% | 2463 |
| chr20 | 187036 | 0.29% | 1072 |
| chr21 | 76618 | 0.16% | 418 |
| chr22 | 157020 | 0.31% | 878 |
| chrX | 181710 | 0.12% | 1015 |
| chrY | 6494 | 0.01% | 37 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 36708 | 2 | 700 | 179.45 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF957QFW.bed.gz | 402.81 KB | 60d13a2656c064a9e1989f39aa612184 |
| ENCFF957QFW.tabix.bed.gz | 363.42 KB | 242559b20e311c415789eb7ad03938f2 |
| ENCFF957QFW.tabix.bed.gz.tbi | 196.8 KB | dc0a5bad2ef4f0fb0562e0311e06cf42 |
| genomic_resource.yaml | 2.24 KB | e31f05ab204809b4f6a5542fdbfc442a |
| statistics/ |