Resource

Id DNase-seq/ENCSR533VAFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR533VAF [biosample_summary="Homo sapiens heart tissue female embryo (147 days)"]
Description
Labels
  • accession: ENCSR533VAF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000948/
  • biosample_summary: Homo sapiens heart tissue female embryo (147 days)
  • date_created: 2015-09-16T21:42:26.049106+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR533VAF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (147 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR533VAF float

DNase-seq_ENCSR533VAF
DNase-seq ENCSR533VAF [biosample_summary="Homo sapiens heart tissue female embryo (147 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR533VAF [3, 780]
n
10,417,667
mean
39.6
sd
26.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 104176670.32% 69001
chr1 973570 0.39% 6453
chr2 858722 0.35% 5697
chr3 730460 0.37% 4841
chr4 610017 0.32% 4028
chr5 615850 0.34% 4075
chr6 685528 0.40% 4548
chr7 537157 0.34% 3560
chr8 479849 0.33% 3182
chr9 409021 0.30% 2708
chr10 507558 0.38% 3357
chr11 505463 0.37% 3345
chr12 545105 0.41% 3608
chr13 296296 0.26% 1961
chr14 313447 0.29% 2075
chr15 353294 0.35% 2338
chr16 288844 0.32% 1909
chr17 378291 0.45% 2511
chr18 249382 0.31% 1652
chr19 324753 0.55% 2160
chr20 224145 0.35% 1484
chr21 121154 0.26% 803
chr22 154395 0.30% 1021
chrX 254466 0.16% 1679
chrY 900 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69001 3 450 150.98 150
global segment-length histogram

Files

Filename Size md5
ENCFF874KUM.bed.gz 663.85 KB 8ac29c6dd965197439cade55dc2dcc53
ENCFF874KUM.tabix.bed.gz 568.09 KB 0d28e5437c4cc677d62cc9285c402dde
ENCFF874KUM.tabix.bed.gz.tbi 306.02 KB 678bd58da7598a18f5568e712c24a848
genomic_resource.yaml 1.39 KB 4488b388793303deaa01d5fc1e90e6ba
statistics/