Resource
| Id | DNase-seq/ENCSR531AYV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR531AYV [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (24 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (24 years) output_type: peaks audit_warning: Alignment file {ENCFF145NLF|/files/ENCFF145NLF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 39140288 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR531AYV | float |
DNase-seq_ENCSR531AYV |
DNase-seq ENCSR531AYV [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (24 years)"]
|
 |
[0.333, 64.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6451819 | 0.20% | 34245 |
| chr1 | 668350 | 0.27% | 3559 |
| chr2 | 434140 | 0.18% | 2307 |
| chr3 | 338145 | 0.17% | 1784 |
| chr4 | 219097 | 0.12% | 1137 |
| chr5 | 287155 | 0.16% | 1498 |
| chr6 | 373587 | 0.22% | 2001 |
| chr7 | 297492 | 0.19% | 1580 |
| chr8 | 226405 | 0.16% | 1213 |
| chr9 | 252948 | 0.18% | 1350 |
| chr10 | 266151 | 0.20% | 1425 |
| chr11 | 338147 | 0.25% | 1800 |
| chr12 | 332990 | 0.25% | 1763 |
| chr13 | 126620 | 0.11% | 668 |
| chr14 | 237289 | 0.22% | 1243 |
| chr15 | 201915 | 0.20% | 1087 |
| chr16 | 262335 | 0.29% | 1398 |
| chr17 | 409506 | 0.49% | 2172 |
| chr18 | 89911 | 0.11% | 492 |
| chr19 | 492978 | 0.84% | 2559 |
| chr20 | 175620 | 0.27% | 960 |
| chr21 | 72069 | 0.15% | 392 |
| chr22 | 158758 | 0.31% | 846 |
| chrX | 182770 | 0.12% | 970 |
| chrY | 7441 | 0.01% | 41 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 34245 | 2 | 760 | 188.4 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF937FLI.bed.gz | 381.92 KB | 30649672602044f5a5c241cbb96ef9ed |
| ENCFF937FLI.tabix.bed.gz | 346.55 KB | 73ff229d098b5d81ed54061a3c5ee297 |
| ENCFF937FLI.tabix.bed.gz.tbi | 181.05 KB | 217eb713ccdabe4fda81a85be51c8283 |
| genomic_resource.yaml | 1.93 KB | e7a836a07891ee8fa2c7abf1e833318c |
| statistics/ |