Resource

Id DNase-seq/ENCSR525VCHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR525VCH [biosample_summary="Homo sapiens effector CD4-positive, alpha-beta T cell female adult (25 years)"]
Description
Labels
  • accession: ENCSR525VCH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0001044/
  • biosample_summary: Homo sapiens effector CD4-positive, alpha-beta T cell female adult (25 years)
  • date_created: 2020-04-13T17:34:05.708593+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR525VCH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR525VCH float

DNase-seq_ENCSR525VCH
DNase-seq ENCSR525VCH [biosample_summary="Homo sapiens effector CD4-positive, alpha-beta T cell female adult (25 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR525VCH [0.112, 44.2]
n
9,069,085
mean
5.08
sd
5.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90690850.28% 47740
chr1 936219 0.38% 4921
chr2 624620 0.26% 3324
chr3 488039 0.25% 2577
chr4 312310 0.16% 1611
chr5 405954 0.22% 2119
chr6 527466 0.31% 2755
chr7 416858 0.26% 2215
chr8 333420 0.23% 1769
chr9 357802 0.26% 1890
chr10 404807 0.30% 2155
chr11 473599 0.35% 2489
chr12 470041 0.35% 2477
chr13 177274 0.16% 918
chr14 324189 0.30% 1704
chr15 280998 0.28% 1523
chr16 367779 0.41% 1941
chr17 557118 0.67% 2924
chr18 136570 0.17% 739
chr19 617163 1.05% 3142
chr20 250160 0.39% 1340
chr21 107301 0.23% 568
chr22 225749 0.44% 1197
chrX 273411 0.18% 1440
chrY 238 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47740 1 740 189.97 180
global segment-length histogram

Files

Filename Size md5
ENCFF921HYE.bed.gz 537.1 KB af7c757491481a6c9e6a3d192c9dfa20
ENCFF921HYE.tabix.bed.gz 492.53 KB c834d3c5d06de7fe7f35e28c7375ec11
ENCFF921HYE.tabix.bed.gz.tbi 217.01 KB 8e38fcf0d0a23802da3cfa740c6b57ff
genomic_resource.yaml 1.29 KB 8fc39981c756bdf5e3924e09b96027df
statistics/