Resource
| Id | DNase-seq/ENCSR524QBS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR524QBS [biosample_summary="Homo sapiens cardiac septum tissue female adult (41 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF478AUS|/files/ENCFF478AUS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR524QBS | float |
DNase-seq_ENCSR524QBS |
DNase-seq ENCSR524QBS [biosample_summary="Homo sapiens cardiac septum tissue female adult (41 years)"]
|
 |
[0.035, 13.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 31606091 | 0.98% | 166835 |
| chr1 | 2790408 | 1.12% | 14655 |
| chr2 | 2901047 | 1.20% | 15075 |
| chr3 | 1715751 | 0.87% | 9007 |
| chr4 | 884924 | 0.47% | 4624 |
| chr5 | 1444917 | 0.80% | 7601 |
| chr6 | 1185052 | 0.69% | 6369 |
| chr7 | 1759034 | 1.10% | 9312 |
| chr8 | 1419230 | 0.98% | 7391 |
| chr9 | 1395974 | 1.01% | 7412 |
| chr10 | 2139315 | 1.60% | 11200 |
| chr11 | 1925545 | 1.43% | 10003 |
| chr12 | 1170595 | 0.88% | 6336 |
| chr13 | 570206 | 0.50% | 3067 |
| chr14 | 1006975 | 0.94% | 5316 |
| chr15 | 1217680 | 1.19% | 6505 |
| chr16 | 1188724 | 1.32% | 6460 |
| chr17 | 1567438 | 1.88% | 8371 |
| chr18 | 626409 | 0.78% | 3323 |
| chr19 | 1121034 | 1.91% | 5946 |
| chr20 | 1130460 | 1.75% | 6032 |
| chr21 | 551768 | 1.18% | 2824 |
| chr22 | 1227148 | 2.41% | 6328 |
| chrX | 664620 | 0.43% | 3664 |
| chrY | 1837 | <0.01% | 14 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 166835 | 2 | 1040 | 189.45 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF825VZG.bed.gz | 1.6 MB | 41f8e2b6e86b616a2dea2a6c4950e316 |
| ENCFF825VZG.tabix.bed.gz | 1.49 MB | d0011651b6885f922bf36ed0e619224c |
| ENCFF825VZG.tabix.bed.gz.tbi | 259.4 KB | bba6282d530c8b7538737131be0f83c0 |
| genomic_resource.yaml | 2.05 KB | 2db205fae39142b775a806d021f37113 |
| statistics/ |