Resource

Id DNase-seq/ENCSR524DWScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR524DWS [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (120 days)"]
Description
Labels
  • accession: ENCSR524DWS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0005270/
  • biosample_summary: Homo sapiens renal cortex interstitium tissue female embryo (120 days)
  • date_created: 2015-09-16T21:42:33.795266+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR524DWS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR524DWS float

DNase-seq_ENCSR524DWS
DNase-seq ENCSR524DWS [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (120 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR524DWS [0.239, 27.2]
n
10,135,729
mean
3.09
sd
3.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 101357290.32% 56894
chr1 930546 0.37% 5188
chr2 787776 0.33% 4440
chr3 648980 0.33% 3691
chr4 513129 0.27% 2891
chr5 573098 0.32% 3191
chr6 599692 0.35% 3391
chr7 496413 0.31% 2844
chr8 458093 0.32% 2595
chr9 428833 0.31% 2427
chr10 501106 0.37% 2831
chr11 514844 0.38% 2915
chr12 511681 0.38% 2870
chr13 263640 0.23% 1519
chr14 332238 0.31% 1831
chr15 318705 0.31% 1791
chr16 333602 0.37% 1850
chr17 412389 0.50% 2297
chr18 235631 0.29% 1349
chr19 437867 0.75% 2238
chr20 270045 0.42% 1544
chr21 112062 0.24% 634
chr22 173399 0.34% 971
chrX 281718 0.18% 1594
chrY 242 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56894 3 874 178.15 180
global segment-length histogram

Files

Filename Size md5
ENCFF049BJU.bed.gz 606.17 KB 13051ad2c2705be033185068c83a4198
ENCFF049BJU.tabix.bed.gz 537.71 KB 4e46189be03fdcbdf26f3c02f77d956b
ENCFF049BJU.tabix.bed.gz.tbi 322.8 KB 134ef8d0c65980c1f048aebcc4f5737e
genomic_resource.yaml 1.89 KB 9a1f9e577d52af228327f8c82d54ab57
statistics/